“mutsig2CV”
Archive for the 'SciLit' Category
Discovery and saturation analysis of cancer genes across 21 tumour … – PubMed – NCBI
November 11, 2014Comment on “The Consensus Coding Sequences of Human Breast and Colorectal Cancers”
November 11, 2014MutSig – 1.0 – Getz et al. Science 2007
MutSigCV – CV – covariates
mutations need to cluster at hotspots & in functional regions
http://www.sciencemag.org/content/317/5844/1500.2
Science 14 September 2007:
Vol. 317 no. 5844 p. 1500
DOI: 10.1126/science.1138764
TECHNICAL COMMENTS
Comment on “The Consensus Coding Sequences of Human Breast and Colorectal Cancers”
Gad Getz1,*,†,
Holger Höfling2,*,
Jill P. Mesirov1,
Todd R. Golub1,3,4,5,6,
Matthew Meyerson1,3,
Robert Tibshirani2,7,
Eric S. Lander1,6,8
Diverse mechanisms of somatic structural variations in human cancer genomes
November 11, 2014contains a mechanisms pipeline, similar to breakseq
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704973/#!po=42.5926
Cell. Author manuscript; available in PMC May 9, 2014.
Cell. May 9, 2013; 153(4): 919–929.
doi: 10.1016/j.cell.2013.04.010
PMCID: PMC3704973
NIHMSID: NIHMS475485
Diverse mechanisms of somatic structural variations in human cancer genomes Lixing Yang,1 Lovelace J. Luquette,1 Nils Gehlenborg,1,2 Ruibin Xi,1 Psalm S. Haseley,1,3 Chih-Heng Hsieh,4Chengsheng Zhang,4 Xiaojia Ren,3 Alexei Protopopov,5 Lynda Chin,5 Raju Kucherlapati,3,6 Charles Lee,4 and Peter J. Park1,3,7,*
The DNA Data Deluge – IEEE Spectrum
November 10, 2014The DNA Data Deluge
http://spectrum.ieee.org/biomedical/devices/the-dna-data-deluge
Predicting Social Security numbers from public data
November 10, 2014Predicting Social Security numbers from public data
http://www.pnas.org/content/106/27/10975.abstract
Global Alliance for Genomics and Health · GitHub
November 10, 2014Global Alliance for Genomics and Health Github
https://github.com/ga4gh
Genome Biology | Full text | Cloud-scale RNA-sequencing differential expression analysis with Myrna
November 10, 2014Algorithms for Molecular Biology | Full text | Data compression for sequencing data
November 10, 2014Data compression for sequencing data
http://www.almob.org/content/8/1/25
An Empirical Analysis of Topic Modeling for Mining Cancer Clinical Notes
November 10, 2014An Empirical Analysis of Topic Modeling for Mining Cancer Clinical Notes http://www.computer.org/csdl/proceedings/icdmw/2013/3142/00/3143a056-abs.html
Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT)
November 10, 2014Shimizu cites: Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT)
http://bioinformatics.oxfordjournals.org/content/30/9/1266.long
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