Posts Tagged ‘jclub’
Invitation: Group Presentation by TXL //=NEXT-in-list, LAB-ATTEND! – … @ Fri Jan 14, 2022 12pm – 1:30pm (EST) (all)
March 6, 2022Neural Distance Embeddings for Biological Sequences
Gabriele Corso, Rex Ying, Michal Pándy, Petar Veličković, Jure Leskovec, Pietro Liò
abs: https://arxiv.org/abs/2109.09740
github: https://github.com/gcorso/NeuroSE
https://arxiv.org/pdf/2109.09740.pdf
https://proceedings.neurips.cc/paper/2021/file/9a1de01f893e0d2551ecbb7ce4dc963e-Paper.pdf
Updated invitation: Group Presentation by SP //=NEXT-in-list, LAB-ATTEND! – g… @ Fri Feb 4, 2022 10:30am – 12pm (EST) (all)
March 1, 2022Liked the extensive scATAC-seq analysis. We discussed this in a journal club.
https://www.nature.com/articles/s41586-021-03209-8
Single-cell epigenomics reveals mechanisms of human cortical development
Ryan S. Ziffra, Chang N. Kim, Jayden M. Ross, Amy Wilfert, Tychele N. Turner, Maximilian Haeussler, Alex M. Casella, Pawel F. Przytycki, Kathleen C. Keough, David Shin, Derek Bogdanoff, Anat Kreimer, Katherine S. Pollard, Seth A. Ament, Evan E. Eichler, Nadav Ahituv & Tomasz J. Nowakowski
Nature volume 598, pages 205–213 (2021)
The power of genetic diversity in genome-wide association studies of lipids | Nature
January 10, 2022https://www.nature.com/articles/s41586-021-04064-3
some focus on its main method
MR-MEGA
https://academic.oup.com/hmg/article/26/18/3639/3976569
Using deep learning to model the hierarchical structure and function of a cell | Nature Methods
September 18, 2021https://www.nature.com/articles/nmeth.4627
interpretable deep learning model
Using multiple measurements of tissue to estimate subject- and cell-type-specific gene expression | Bioinformatics | Oxford Academic
May 3, 2021Nice analysis integrating bulk & single-cell data, to get at inter-individual differences in the expression of genes in specific
cell types https://academic.OUP.com/bioinformaticsformatics/article/36/3/782/5545976
Using multiple measurements of tissue to estimate subject- and cell-type-specific gene expression
https://academic.oup.com/bioinformatics/article/36/3/782/5545976
ADORA1 Gene – GeneCards | AA1R Protein | AA1R Antibody
October 12, 2019Journal Club by JG
July 27, 2018TWAS of 229k women identifies new candidate susceptibility genes for breast cancer https://www.Nature.com/articles/s41588-018-0132-x Metascan approach. Derive model for imputing transcriptome from #GTEx & validate against TCGA. Application to BCAC.
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder | Nature Neuroscience
July 27, 2018Genome-wide prediction & functional characterization of the genetic basis of autism spectrum disorder, by @OlgaTroyanskaya lab
https://www.Nature.com/articles/nn.4353 Intersected candidate #ASD genes w/ #BrainSpan gene expression to find a pre-natal signal for the disease
linkstream2 microblog 