Posts Tagged ‘entex’

Determinants of telomere length across human tissues | Science

September 27, 2020

https://science.sciencemag.org/content/369/6509/eaaz6876.full Nice relationship to aging; related to Me analysis

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight | Science

August 21, 2020

https://science.sciencemag.org/content/364/6436/eaau8650

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight | Science

August 19, 2020

https://science.sciencemag.org/content/364/6436/eaau8650

What is the difference between precision medicine and personalized medicine? What about pharmacogenomics? – Genetics Home Reference – NIH

August 15, 2020

https://ghr.nlm.nih.gov/primer/precisionmedicine/precisionvspersonalized

Personalized and graph genomes reveal missing signal in epigenomic data

June 14, 2020

Personalized and graph genomes reveal missing signal in epigenomic data Cristian Groza, Tony Kwan, Nicole Soranzo, Tomi Pastinen & Guillaume Bourque Genome Biology volume 21, Article number: 124 (2020)

QT:{{ “Using permissive cutoffs, modified reference genomes are found to alter approximately 1% of peak calls while de novo assembled genomes alter up to 5% of peaks.” }}

Mapping and characterization of structural variation in 17,795 human genomes

May 28, 2020

https://www.nature.com/articles/s41586-020-2371-0
think allele frequencies are publicly available

Detecting sample swaps in diverse NGS data types using linkage disequilibrium | bioRxiv

April 29, 2020

https://www.biorxiv.org/content/10.1101/2020.03.15.992750v2

https://twitter.com/michaelhoffman/status/1255222686646747136 swap paper

Comparing tads across samples

April 6, 2020

newly published tool

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription

Guangyu Wang, Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao, Yanqiang Li, Xin Wang, Lili Zhang, John P. Cooke, Qi Cao & Kaifu Chen

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-01992-7

chip-seq normalization

February 8, 2020

https://www.biorxiv.org/content/10.1101/2020.01.31.929174v1

Paper of interest

February 1, 2020

https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6516-1

The effects of common structural variants on 3D chromatin structure

Omar Shanta, Amina Noor, Human Genome Structural Variation Consortium (HGSVC) & Jonathan Sebat

BMC Genomics volume 21, Article number: 95 (2020)