Posts Tagged ‘entex’

motif discovery on personal genomes

October 9, 2021

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009444

Allele-Specific QTL Fine Mapping with PLASMA: The American Journal of Human Genetics

July 17, 2021

https://www.cell.com/ajhg/fulltext/S0002-9297(19)30505-1

Interpretation of allele-specific chromatin accessibility using cell state-aware deep learning

May 18, 2021

https://genome.cshlp.org/content/early/2021/04/08/gr.260851.120.abstract

Supplements + resource websites for big genomics papers

March 3, 2021

Ideas on supplements for genomics papers

http://papers.gersteinlab.org/papers/gbsuppl
http://papers.gersteinlab.org/papers/encodecomm

Papers with big supplements (recent structure)

http://papers.gersteinlab.org/papers/cmptxn
http://papers.gersteinlab.org/papers/capstone4
http://papers.gersteinlab.org/papers/encodec

Paper with big supplements (other examples)

http://papers.gersteinlab.org/papers/paperE
http://papers.gersteinlab.org/papers/encodenets
http://papers.gersteinlab.org/papers/wormawg

Determinants of telomere length across human tissues | Science

September 27, 2020

https://science.sciencemag.org/content/369/6509/eaaz6876.full Nice relationship to aging; related to Me analysis

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight | Science

August 21, 2020

https://science.sciencemag.org/content/364/6436/eaau8650

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight | Science

August 19, 2020

https://science.sciencemag.org/content/364/6436/eaau8650

What is the difference between precision medicine and personalized medicine? What about pharmacogenomics? – Genetics Home Reference – NIH

August 15, 2020

https://ghr.nlm.nih.gov/primer/precisionmedicine/precisionvspersonalized

Personalized and graph genomes reveal missing signal in epigenomic data

June 14, 2020

Personalized and graph genomes reveal missing signal in epigenomic data Cristian Groza, Tony Kwan, Nicole Soranzo, Tomi Pastinen & Guillaume Bourque Genome Biology volume 21, Article number: 124 (2020)

QT:{{ “Using permissive cutoffs, modified reference genomes are found to alter approximately 1% of peak calls while de novo assembled genomes alter up to 5% of peaks.” }}

Mapping and characterization of structural variation in 17,795 human genomes

May 28, 2020

https://www.nature.com/articles/s41586-020-2371-0
think allele frequencies are publicly available