Posts Tagged ‘mynotes0mg’

Invitation: Group Presentation by TXL //=NEXT-in-list, LAB-ATTEND! – … @ Fri Jan 14, 2022 12pm – 1:30pm (EST) (all)

March 6, 2022

Neural Distance Embeddings for Biological Sequences

Gabriele Corso, Rex Ying, Michal Pándy, Petar Veličković, Jure Leskovec, Pietro Liò

abs: https://arxiv.org/abs/2109.09740
github: https://github.com/gcorso/NeuroSE
https://arxiv.org/pdf/2109.09740.pdf
https://proceedings.neurips.cc/paper/2021/file/9a1de01f893e0d2551ecbb7ce4dc963e-Paper.pdf

The power of genetic diversity in genome-wide association studies of lipids | Nature

January 10, 2022

https://www.nature.com/articles/s41586-021-04064-3

some focus on its main method
MR-MEGA
https://academic.oup.com/hmg/article/26/18/3639/3976569

Frontiers | InferBERT: A Transformer-Based Causal Inference Framework for Enhancing Pharmacovigilance | Artificial Intelligence

July 31, 2021

Nice talk by W Tong at #ISMBECCB21 (CAMDA session) discussing the FDA perspective on how to do AI for regulatory science. He presents the TRIAL framework: transparency, reliability, interpretability, applicability & liability. #ISMBECCB2021

In relation to interpretability, he discusses InferBert
(https://www.frontiersin.org/articles/10.3389/frai.2021.659622/full) which builds a Bayesian causality framework (using the Do-calculus) for interpreting the BERT transformer based model. #ISMBECCB21 #ISMBECCB2021

ISMB 2020 Virtual Event Now Open

July 23, 2020

Liked Tweets

https://docs.google.com/spreadsheets/d/e/2PACX-1vSL5oTFB7zFnuZNGerK8xACj8jhBaj4KYNSg-XdT-nJgE3GOEnmwVf3lEumKVtQCxZ3h52XUZkN3Yex/pubhtml

Tagged items

https://linkstream2.gerstein.info/tag/ismb2020/

Slide pics

in labdropbox on 22 July 2020

updated attachments: next week: GSP-TOPMed Analysis Workshop Feb 12-13 in NYC

February 23, 2020

my notes

https://mail.google.com/mail/u/0/?ogbl#search/i0top19

slides

http://meetings.gersteinlab.org/2020/02.13/slide-pics-from-GSP-TopMed-workshop-i0top19/

http://meetings.gersteinlab.org/2020/02.21/i0top19-day-slides/

https://linkstream2.gerstein.info/tag/i0top19/

Genome Informatics meeting at CSHL: abstract book and arrival information

November 10, 2019

Various files in labdropbox:

Liked-Tweets-from-i0gi19-gi2019.xlsx
2019-11-06 19.11.56.i0gi19-gi2019-pics.jpg
2019-11-06 22.01.30.i0gi19-gi2019-pics.jpg
i0gi19–Info2019_AbstractBook.pdf

Tagged items
https://linkstream2.gerstein.info/tag/i0gi19

AnVIL ECC Meeting (Sep 9 & 10 – Cambridge, MA)

September 10, 2019

http://meetings.gersteinlab.org/2019/09.10/i0anv19-meeting-material.emailpasswd.zip archived meeting materials (encrypted)

http://meetings.gersteinlab.org/2019/09.10/i0anv19-mynotes0mg-highlights.docx highlighted notes for discussion

Tagged items (with tag i0anv19)
https://linkstream2.gerstein.info/tag/i0anv19/

Meeting Materials for Perspectives in Comparative Genomics & Evolution – August 15-16, 2019

August 19, 2019

* MEETING URL

https://www.genome.gov/event-calendar/perspectives-in-comparative-genomics-and-evolution

* MATERIAL in labdropbox

http://meetings.gersteinlab.org/2019/08.19/i0cmp19-stuff/

including:

Liked-tweets-from-i0cmp19.pdf + Liked-Tweets-from-i0cmp19.xlsx i0cmp19-slides
EXTRACT-FOR-LAB–mynotes0mg-from-i0cmp19.docx

* MATERIAL in labdropbox3

Comparative-Genomics-and-Evolution-Workshop-20190819T044729Z-001.zip

Materials from recent conferences – i0bog19 (incl. HGSV), i0ox19, i0recomb19, i0bhi

May 22, 2019

## LIKED TWEETS

https://docs.google.com/spreadsheets/d/e/2PACX-1vTvr0yAj8H4A_0wSO1ZnYoc2QM6R2ULwMQJpxLeHiUjUzcgu6EimfCa4sXlXbbLJMdFhg1JKCAuIoKE/pubhtml

archived as:
http://meetings.gersteinlab.org/2019/05.22/Liked-Tweets-from-i0bog19-i0recomb19-i0ox19-i0bhi.xlsx

## TALKS

http://lectures.gersteinlab.org/summary/Interpretable-deep-learning-model–20190505-i0recomb19/

http://lectures.gersteinlab.org/summary/Finding-drug-targets-n-predicting-sensitivity-of-drugs-to-variants–20190515-i0ox19/

http://lectures.gersteinlab.org/summary/Quantification-of-sens-info-leakage–20190521-i0bhi/

## LINKS

https://linkstream2.gerstein.info/tag/i0bog19/

## NOTES (Private)

Archived notes for the lab:
http://meetings.gersteinlab.org/2019/05.22/Public-notes-from-i0bog19-i0recomb19-i0bhi.docx

Also, slide pics in labdropbox on 19 & 21 May in folders :

i0bog19-slide-pics
notes-from-i0ox19–slidepics
slide-pics-from-i0recomb19
slide-pics-from-i0bhi

notes from recent meetings – i0mcbios, i0brd19, i0hnb, i0aisoc

April 7, 2019

https://linkstream2.gerstein.info/tag/i0brd19/
https://linkstream2.gerstein.info/tag/i0hnb/