Posts Tagged ‘gg’

George Church’s new article

September 3, 2018

How we Benefit from Getting our Genomes Sequenced
https://medium.com/@geochurch/how-we-benefit-from-getting-our-genomes-sequenced-73f173ddaab

text mining and privacy

August 4, 2018

Don’t quote me: reverse identification of research participants in social media studies

John W. Ayers,
Theodore L. Caputi,
Camille Nebeker &
Mark Dredze

npj Digital Medicine
volume 1, Article number: 30 (2018)

https://www.nature.com/articles/s41746-018-0036-2

GA4GH’s paper on data sharing

July 27, 2018

Perspective | OPEN | Published: 23 July 2018

Responsible sharing of biomedical data and biospecimens via the “Automatable Discovery and Access Matrix” (ADA-M)

J. Patrick Woolley,
Emily Kirby,
Josh Leslie,
Francis Jeanson,
Moran N. Cabili,
Gregory Rushton,
James G. Hazard,
Vagelis Ladas,
Colin D. Veal,
Spencer J. Gibson,
Anne-Marie Tassé,
Stephanie O. M. Dyke,
Clara Gaff,
Adrian Thorogood,
Bartha Maria Knoppers,
John Wilbanks &
Anthony J. Brookes

npj Genomic Medicinevolume 3, Article number: 17 (2018) | Download Citation

new paper in Nature Genomic Medicine:
https://www.nature.com/articles/s41525-018-0057-4

scientists on twitter: preaching to the choir or singing from the rooftops?

July 11, 2018

http://www.facetsjournal.com/doi/full/10.1139/facets-2018-0002#.WzmasWXTsqo.twitter

Leonardo Da Vinci’s DNA

July 1, 2018

original announcement here:
https://www.eurekalert.org/pub_releases/2016-05/tca-ldv050316.php Rumors that they will make his DNA public very soon.

DNA by numbers

June 26, 2018

https://www.forensicmag.com/article/2015/10/dna-numbers)
work related to DNA leakage in daily life

mammalian tissue expression database

June 1, 2018

curated tissue expression database for mammalians: human, mouse, rat, pig

web: https://tissues.jensenlab.org/
paper: https://academic.oup.com/database/article/doi/10.1093/database/bay003/4851151 a relevant figure:
https://academic.oup.com/view-large/figure/112879298/bay003f2.tif

Augmented reality for macromolecule viewing

April 22, 2018

Incredible Android app for AR viewing of macromolecules http://CIRC.Rutgers.edu/new-dimension-poster-presentation Especially neat when pointed at another phone or tablet. Shows the molecule literally coming out of the screen HT @gamzeandgursoy

an app that might be interesting: When you look at the molecule pictures that are called triggers through this
app, it shows them three dimensional in different angles. You can even
create movie type augmented realities.

systematic comparison of dnase-seq & atac-seq

April 21, 2018

Reproducible inference of TF footprints in #ATACseq & DNase-seq…via protocol-specific bias modeling
https://www.BiorXiv.org/content/early/2018/03/19/284364 Systematic comparison of the 2 assay HT @gamzeandgursoy

info theory book by Cover&Thomas

April 5, 2018

http://www.cs-114.org/wp-content/uploads/2015/01/Elements_of_Information_Theory_Elements.pdf

local copy at
http://meetings.gersteinlab.org/2018/04.05/Cover%20Thomas%202006_-_Elements_of_Information_Theory_2nd_Ed.pdf