Archive for the 'SciLit' Category

The mutational footprints of cancer therapies

November 23, 2019

https://www.nature.com/articles/s41588-019-0525-5

Characterizing the Major Structural Variant Alleles of the Human Genome: Cell

November 10, 2019

https://www.cell.com/cell/fulltext/S0092-8674(18)31633-7

Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq

November 2, 2019

https://www.biorxiv.org/content/10.1101/762773v1

Second fetal brain article…splciing and expression QTL and integration with single cell with WGCNA networks

October 29, 2019

https://www.sciencedirect.com/science/article/pii/S0092867419310724?dgcid=author

Rebecca L. Walker, Gokul Ramaswami, Christopher Hartl, Nicholas Mancuso, Michael J. Gandal, Luis de la Torre-Ubieta, Bogdan Pasaniuc, Jason L. Stein, Daniel H. Geschwind,

Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms,

Cell,

Volume 179, Issue 3,
2019,
Pages 750-771.e22,
ISSN 0092-8674,
https://doi.org/10.1016/j.cell.2019.09.021

Cultural evolutionary theory: How culture evolves and why it matters | PNAS

October 27, 2019

https://www.pnas.org/content/114/30/7782

Cultural evolutionary theory: How culture evolves and why it matters

Nicole Creanza, Oren Kolodny, and Marcus W. Feldman
PNAS July 25, 2017 114 (30) 7782-7789; first published July 24, 2017 https://doi.org/10.1073/pnas.1620732114

Edited by Kevin N. Laland, University of St. Andrews, St. Andrews, United Kingdom, and accepted by Editorial Board Member Andrew G. Clark April 29, 2017 (received for review January 16, 2017)

DNA methylation age of human tissues and cell types | Genome Biology | Full Text

October 26, 2019

Published: 10 December 2013
DNA methylation age of human tissues and cell types
Steve Horvath
Genome Biology volume 14, Article number: 3156 (2013)

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-10-r115

New cell type analysis in human cortex

October 26, 2019

Published: 21 August 2019

Conserved cell types with divergent features in human versus mouse cortex

Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Brian Long, Nelson Johansen, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz P. Levi, Soraya I. Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard G. Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder P. Gwinn, Daniel Hirschstein, C. Dirk Keene, Mohamed Keshk, Andrew L. Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey G. Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya V. Shapovalova, Saroja
Somasundaram, Aaron Szafer, Elliot R. Thomsen, Michael Tieu, Gerald Quon, Richard H. Scheuermann, Rafael Yuste, Susan M. Sunkin, Boudewijn Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John W. Phillips, Bosiljka Tasic, Hongkui Zeng, Allan R. Jones, Christof Koch & Ed S. Lein

https://www.nature.com/articles/s41586-019-1506-7

Google’s quantum supremacy

October 26, 2019

https://youtu.be/-ZNEzzDcllU
https://www.nature.com/articles/s41586-019-1666-5

A primer on deep learning in genomics | Nature Genetics

October 20, 2019

A primer on deep learning in genomics | Nature Genetics
https://www.nature.com/articles/s41588-018-0295-5
James Zou, Mikael Huss, Abubakar Abid, Pejman Mohammadi, Ali Torkamani & Amalio Telenti
Nature Genetics volume 51, pages12–18 (2019)

Vinclozolin induced epigenetic transgenerational inheritance of pathologies and sperm epimutation biomarkers for specific diseases

October 20, 2019

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0202662

Vinclozolin induced epigenetic transgenerational inheritance of pathologies and sperm epimutation biomarkers for specific diseases Eric Nilsson,Stephanie E. King,Margaux McBirney,Deepika
Kubsad,Michelle Pappalardo,Daniel Beck,Ingrid Sadler-Riggleman,Michael K. Skinner