Archive for the 'SciLit' Category

Barcoded microbial system for high-resolution object provenance | Science

June 27, 2020

https://science.sciencemag.org/content/368/6495/1135

Interesting paper. Wonder whether this technology could readily track people and thus has #privacy implications…

Barcoded microbial system for high-resolution object provenance

Jason Qian1,2,3,*,
Zhi-xiang Lu1,2,*,
Christopher P. Mancuso4,*, Han-Ying Jhuang1,*,
Rocío del Carmen Barajas-Ornelas5,*,
Sarah A. Boswell1,2,*,
Fernando H. Ramírez-Guadiana5, Victoria Jones1,6,†, Akhila Sonti4,
Kole Sedlack4,‡,
Lior Artzi5,
Giyoung Jung7,
Mohammad Arammash1,
Mary E. Pettit1, Michael Melfi1, Lorena Lyon1,
Siân V. Owen6,
Michael Baym2,6,
Ahmad S. Khalil4,8,
Pamela A. Silver1,8, David Z. Rudner5,
Michael Springer1,2,§

Science 05 Jun 2020:
Vol. 368, Issue 6495, pp. 1135-1140
DOI: 10.1126/science.aba5584

Personalized and graph genomes reveal missing signal in epigenomic data

June 14, 2020

Personalized and graph genomes reveal missing signal in epigenomic data Cristian Groza, Tony Kwan, Nicole Soranzo, Tomi Pastinen & Guillaume Bourque Genome Biology volume 21, Article number: 124 (2020)

QT:{{ “Using permissive cutoffs, modified reference genomes are found to alter approximately 1% of peak calls while de novo assembled genomes alter up to 5% of peaks.” }}

Reducing transmission of SARS-CoV-2 | Science

June 12, 2020

https://science.sciencemag.org/content/early/2020/06/08/science.abc6197

sequencing of Dead Sea Scrolls

June 6, 2020

https://www.sciencedirect.com/science/article/pii/S0092867420305523
Illuminating Genetic Mysteries of the Dead Sea Scrolls

What will drive computer performance after Moore’s law?

June 6, 2020

https://science.sciencemag.org/content/368/6495/eaam9744

Superspreading and the effect of individual variation on disease emergence | Nature

June 3, 2020

https://www.nature.com/articles/nature04153

J. O. Lloyd-Smith, S. J. Schreiber, P. E. Kopp & W. M. Getz
Nature volume 438, pages355–359(2005)

host-viral infection maps from sc-rna seq with a computational framework

June 2, 2020

Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients

https://www.sciencedirect.com/science/article/pii/S0092867420305687

host-viral infection maps from sc-rna seq with a computational framework

June 2, 2020

https://www.sciencedirect.com/science/article/pii/S0092867420305687

Mapping and characterization of structural variation in 17,795 human genomes

May 28, 2020

https://www.nature.com/articles/s41586-020-2371-0
think allele frequencies are publicly available

Travel From New York City Seeded Wave of U.S. Outbreaks

May 25, 2020

Here’s the paper in Cell
https://www.cell.com/pb-assets/products/coronavirus/CELL_CELL-D-20-00892.pdf Apparently done by Nathan Grubagh here at Yale.

https://www.nytimes.com/2020/05/07/us/new-york-city-coronavirus-outbreak.html