Archive for the 'SciLit' Category

Epigenetic inheritance at the agouti locus in the mouse | Nature Genetics

September 24, 2022

https://www.nature.com/articles/ng1199_314

ENCODE Pilot Participants

September 24, 2022

found this:

https://authors.library.caltech.edu/74915/2/Feingold.SOM.DC1.pdf

It’s from this paper:

Feingold, E. A. and Pachter, L. (2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science, 306 (5696). pp. 636-640. ISSN 0036-8075. doi:10.1126/science.1105136.
https://resolver.caltech.edu/CaltechAUTHORS:20170308-133717579

Does coffee increase cancer risk? | Interviews | Naked Scientists

September 16, 2022

Liked the discussion of the paper by @stevesphd on Coffee Consumption
& Cancer Risk (https://clinicalnutritionjournal.com/article/S0261-5614(22)00313-2/fulltext). However, I was surprised that the elevation of stomach acid & GERD from caffeine was not mentioned as a potential reason for the association with esophageal cancer.

https://www.thenakedscientists.com/podcasts/naked-scientists-podcast/covid-vaccines-and-coffee-cups-hot-water

https://twitter.com/stevesphd

https://twitter.com/NakedScientists/status/1566387990330765312

ORIGINAL ARTICLE| VOLUME 41, ISSUE 10, P2113-2123, OCTOBER 01, 2022

Coffee consumption and cancer risk: a Mendelian randomisation study

Paul Carter
Shuai Yuan
Siddhartha Kar
Amy M. Mason
Stephen Burgess
Susanna C. Larsson

Published: August 24, 2022

DOI:https://doi.org/10.1016/j.clnu.2022.08.019

DNA methylation clocks for dogs and humans | PNAS

September 4, 2022

https://www.pnas.org/doi/10.1073/pnas.2120887119

==
Nice paper. Curious: was methylation able to predict weight accurately?

Look-alike humans identified by facial recognition algorithms show genetic similarities: Cell Reports

August 28, 2022

https://www.cell.com/cell-reports/fulltext/S2211-1247(22)01075-0

Might be interesting to compare to a study of how dis-similar genetically identical twins can look

Gencode Transcriptome variation in human tissues revealed by long-read sequencing | Nature

August 8, 2022

https://www.nature.com/articles/s41586-022-05035-y

The source of the Black Death in fourteenth-century central Eurasia | Nature

June 23, 2022

https://www.nature.com/articles/s41586-022-04800-3

Great analysis of ancient (microbial) DNA!

Get law enforcement out of biospecimen authentication

June 18, 2022

https://www.science.org/doi/10.1126/science.abo5386

Not sure how meaningful this proposal is given how trivial it is to identify cell lines and individuals via sequencing. Moreover, it seems like it is trying to create “artificial silos” between research and law enforcement communities.

DEBRA J. H. MATHEWS AND NATALIE RAM
SCIENCE 16 Jun 2022
Vol 376, Issue 6599
pp. 1274-1276
DOI: 10.1126/science.abo5386

A Review of the Semantic Web Field | February 2021 | Communications of the ACM

June 4, 2022

https://cacm.acm.org/magazines/2021/2/250085-a-review-of-the-semantic-web-field/fulltext

HE library links

May 22, 2022

https://www.nature.com/articles/s41586-022-04623-2

Perspective
Published: 11 May 2022
Transitioning organizations to post-quantum cryptography
David Joseph, Rafael Misoczki, Marc Manzano, Joe Tricot, Fernando Dominguez Pinuaga, Olivier Lacombe, Stefan Leichenauer, Jack Hidary, Phil Venables & Royal Hansen
Nature volume 605, pages237–243 (2022)

new paper on post-quantum cryptography (PQC):