Archive for the 'SciLit' Category

The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak

April 1, 2020

https://science.sciencemag.org/content/early/2020/03/05/science.aba9757

The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak

Matteo Chinazzi1, Jessica T. Davis1, Marco Ajelli2, Corrado
Gioannini3, Maria Litvinova3, Stefano Merler2, Ana Pastore y Piontti1, Kunpeng Mu1, Luca Rossi3, Kaiyuan Sun4, Cécile Viboud4, Xinyue Xiong1, Hongjie Yu5, M. Elizabeth Halloran6,7, Ira M. Longini Jr.8,*, Alessandro Vespignani1,3,*

https://www.nytimes.com/2020/03/13/science/coronavirus-social-networks-data.html

Genetic modifiers of risk and age at onset in GBA associated Parkinson’s disease and Lewy body dementia. – PubMed – NCBI

March 8, 2020

https://www.ncbi.nlm.nih.gov/pubmed/31755958

Crack down on genomic surveillance

March 4, 2020

https://www.nature.com/articles/d41586-019-03687-x

Distinct microbial and immune niches of the human colon

February 23, 2020

connects microbiome & immune cells

https://www.nature.com/articles/s41590-020-0602-z.epdf

Kylie R. James, Tomas Gomes, Rasa Elmentaite, …Sarah A. Teichmann

iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone | bioRxiv

February 16, 2020

iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone | bioRxiv https://www.biorxiv.org/content/10.1101/2020.02.11.944132v1

Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function

February 8, 2020

https://www.nature.com/articles/s41416-019-0614-3

chip-seq normalization

February 8, 2020

https://www.biorxiv.org/content/10.1101/2020.01.31.929174v1

Kernel-based whole-genome prediction of complex traits: a review. – PubMed – NCBI

February 8, 2020

https://www.ncbi.nlm.nih.gov/pubmed/25360145/

Paper of interest

February 1, 2020

https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6516-1

The effects of common structural variants on 3D chromatin structure

Omar Shanta, Amina Noor, Human Genome Structural Variation Consortium (HGSVC) & Jonathan Sebat

BMC Genomics volume 21, Article number: 95 (2020)

Tobacco smoking and somatic mutations in human bronchial epithelium

February 1, 2020

https://www.nature.com/articles/s41586-020-1961-1

Tobacco smoking and somatic mutations in human bronchial epithelium

Kenichi Yoshida, Kate H. C. Gowers, Henry Lee-Six, Deepak P. Chandrasekharan, Tim Coorens, Elizabeth F. Maughan, Kathryn Beal, Andrew Menzies, Fraser R. Millar, Elizabeth Anderson, Sarah E. Clarke, Adam Pennycuick, Ricky M. Thakrar, Colin R. Butler, Nobuyuki Kakiuchi, Tomonori Hirano, Robert E. Hynds, Michael R. Stratton, Iñigo Martincorena, Sam M. Janes & Peter J. Campbell