Posts Tagged ‘cbbplan0mg’

Explore Erudite – BD2K Training Coordinating Center

December 6, 2016

http://bigdatau.org/explore_erudite

BioWiki

November 20, 2016

Page with information about many bioinformatics cores.

http://bioinfo-core.org/index.php/Main_Page

Links related to the ISCB Curriculum Task force

November 19, 2016

Here are some links related to the ISCB Curriculum Task Forces:

http://connect.iscb.org/communities/communities/community-home?CommunityKey=f7986992-1c0c-4a52-bd1d-74a2386c4962

https://www.iscb.org/curriculum-guidelines-colleges-universities

http://connect.iscb.org/communities/community-home/digestviewer/viewthread?GroupId=79&MID=30&tab=digestviewer&CommunityKey=e0568cb2-e72e-4bfc-bb66-7d1f2265d846

My notes from #BioData16 with a collection of links related to education in biomedical data science

November 7, 2016

# The meeting
https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=16

# The panel

My lecture
http://lectures.gersteinlab.org/summary/Education-in-Bio-DataScience–20161028-i0bds16/

List of Curricular Topics for Bioinformatics http://goo.gl/303KXr An invitation for crowd-sourced comments to the talk

Panel Slides
https://docs.google.com/presentation/d/1mhcXpr_BhxvCx4Ki4jR4hLRNzm524JMW76H8zL31Yt4/edit?usp=sharing

Cached copy of above gdocs
http://archive.gersteinlab.org/public-docs/2016/11.01/cached-copy-of-biodata16-i0bds16-gdocs/

Earlier versions of the crowd-source edit:
http://cbb752b16.gersteinlab.org/assignments/homework0
Also:
http://blog.gerstein.info/2015/11/list-of-study-topics-prerequisites-for.html

# Related educational resources (unfortunately, Yale-centric):

The Yale CBB program & its focus on Data Science
http://cbb.yale.edu
http://cbb.yale.edu/graduate-program/optional-focus-biomedical-data-science

CBB752 – Biomedical Data Science: Mining & Modeling
http://www.gersteinlab.org/courses/452/

My ’14 list of US Bioinformatics Programs:
http://blog.gerstein.info/2015/05/updated-again-listing-of-us-programs-in.html https://twitter.com/markgerstein/status/600763647095341056

Hackathon slides:
https://docs.google.com/presentation/d/123NLmlYAUrJf2M709kPyDJl3N5wIcOO8W-EGJVxZKN4/edit?usp=sharing

Article on online curriculum:
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003662

Masters of Data Science
http://www.slideshare.net/ttimbers/ubc-mds-education-slides

Favorite Tweets
https://storify.com/markgerstein/favorite-tweets-from-biological-data-science-16-bi

Tagged from meeting
https://linkstream2.gerstein.info/tag/i0bds16/

Biological Data Science Meeting

September 10, 2016

Biological Data Science
October 26 – 29, 2016
Abstract Deadline: August 12, 2016

Organizers:

Bonnie Berger, Massachusetts Institute of Technology
Jeff Leek, Johns Hopkins University
Michael Schatz, Cold Spring Harbor Laboratory

https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=16

The meeting this year has an
“education forum”. A few speakers will be giving short
presentations on the curriculum and resources of various
institutions, followed by a panel Q&A discussion about best practices and needs in the field.

Commonly Taught Bioinformatics Topics, Derived from Syllabi of 19 Universities.

September 24, 2015

A Helpful Reference

https://apps.lis.illinois.edu/wiki/download/attachments/4369699/curriculum+analysis.doc?version=4

Introduction to Systems Modeling in Biology MCDB 261 S15

September 19, 2015

http://mcdb261s15.commons.yale.edu/

Useful NIH Funding Data on Bioinformatics Education

September 6, 2015

BD2K funded programs so far…
https://datascience.nih.gov/bd2k/funded-programs/enhancing-training/institutional-grants

NIGMS Comp Bio & Bioinfo funded predoctoral programs
http://www.nigms.nih.gov/Training/InstPredoc/Pages/PredocInst-Bioinformatics.aspx

THE NLM funded Biomedical Informatics training programs
https://www.nlm.nih.gov/ep/GrantTrainInstitute.html#5

Most Hyped Tech: Big Data Out, IoT In

July 24, 2015

http://www.datanami.com/2014/08/20/hyped-tech-big-data-iot/

NIH approves strategic vision to transform National Library of Medicine

June 17, 2015

Great focus on datascience for the NLMhttp://www.nih.gov/news/health/jun2015/od-11.htm