Posts Tagged ‘brainspan’

Random links related to the PsychENCODE ’18 Rollout

December 23, 2018

Cleaning up stuff from the psychENCODE rollout (my tag “pecrollout”)

* Some “liked” tweets (not exhaustive, mostly positive)

https://docs.google.com/spreadsheets/d/e/2PACX-1vRxRW7_Cq4GgacbPjV9f1un3pXZD092p48I04_aaXMMr4o7nbROdFDKxeFkq7BvrdSk1tWd-jrRlnDX/pubhtml

Private archives of the above :
http://meetings.gersteinlab.org/2018/12.23/Tweet-stuff-from-pecrollout-n-rsgdream18/

* Tagged articles

https://linkstream2.gerstein.info/tag/pecrollout/

* Papers

associated with the Gerstein Lab
http://papers.gersteinlab.org/subject/pecrollout

Science magazie collection
http://www.sciencemag.org/collections/psychencode?_ga=2.143857020.873191909.1545622068-923654032.1534125785

PEC website collection
http://www.psychencode.org/?page_id=227

* Yale pre-print site

http://info.gersteinlab.org/PEC_package_preprints

* Random private archived material

https://www.dropbox.com/home/01-NOT-TOP-LEVEL/ARCHIVE/random-archived-materials-from-pecrollout.x57k

Massive analysis refines map of autism’s genetic roots | Spectrum | Autism Research News

December 23, 2018

https://www.spectrumnews.org/news/massive-analysis-refines-map-autisms-genetic-roots/

Mapping the Brain’s Genetic Landscape – The New York Times

December 17, 2018

https://www.nytimes.com/2018/12/13/health/genetics-brain-autism-schizophrenia.html

In the developing brain, scientists find roots of neuropsychiatric diseases | YaleNews

December 15, 2018

https://news.yale.edu/2018/12/13/developing-brain-scientists-find-roots-neuropsychiatric-diseases

yale press release

Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder | Nature Neuroscience

July 27, 2018

Genome-wide prediction & functional characterization of the genetic basis of autism spectrum disorder, by @OlgaTroyanskaya lab
https://www.Nature.com/articles/nn.4353 Intersected candidate #ASD genes w/ #BrainSpan gene expression to find a pre-natal signal for the disease

Nature 03142018 Single cell rnaseq of development of human brain Pfc

March 18, 2018

https://www.nature.com/articles/nature25980

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

Suijuan Zhong
, Shu Zhang
[…]
Xiaoqun Wang
Nature
doi:10.1038/nature25980

The Brain That Couldn’t Remember – The New York Times

March 5, 2018

The #Brain That Couldn’t Remember
http://www.NYTimes.com/2016/08/07/magazine/the-brain-that-couldnt-remember.html Fight over the ownership of HM’s highlights issues in consent HT @FearLoathingBTX

A Code for Autism | Proto Magazine

December 16, 2017

http://protomag.com/articles/code-autism

Thoughts on the PsychENCODE workshop & Psychiatric Genomics in the Era of Team Science – 2 recent DC meetings on Neurogenomics

July 10, 2017

https://linkstream2.gerstein.info/tag/i0pec17/

Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. – PubMed – NCBI

July 10, 2017

https://www.ncbi.nlm.nih.gov/pubmed/24267886

Cell. 2013 Nov 21;155(5):997-1007. doi: 10.1016/j.cell.2013.10.020.

Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.

Willsey AJ1, Sanders SJ, Li M, Dong S, Tebbenkamp AT, Muhle RA, Reilly SK, Lin L, Fertuzinhos S, Miller JA, Murtha MT, Bichsel C, Niu W, Cotney J, Ercan-Sencicek AG, Gockley J, Gupta AR, Han W, He X, Hoffman EJ, Klei L, Lei J, Liu W, Liu L, Lu C, Xu X, Zhu Y, Mane SM, Lein ES, Wei L, Noonan JP, Roeder K, Devlin B, Sestan N, State MW.

Using brainspan to see where ASD genes are enriched in certain developmental times