Posts Tagged ‘cbb752’

How A.I. Killed Student Writing (and Revived It) – The New York Times

May 16, 2026

https://www.nytimes.com/2026/04/30/us/ai-students-cheating-homework-classrooms.html QT:{{” Instead, in a rapid shift, teachers are requiring students to write inside the classroom, where they can be observed. Assignments have changed too, with some educators prompting students to reflect on their personal reactions to what they’ve learned and read — the type of writing that A.I. struggles to credibly produce. “}}

Transformer youtube video

March 6, 2026

youtube links to the transformer video that is helpful for
understanding the transformer:

https://www.youtube.com/watch?v=wjZofJX0v4M
https://www.youtube.com/watch?v=eMlx5fFNoYc

3Blue1Brown. (2024, April 1). Transformers, the tech behind LLMs | Deep Learning Chapter 5 [Video]. YouTube.
https://www.youtube.com/watch?v=wjZofJX0v4M

Attention in transformers, step-by-step | Deep Learning Chapter 6

MCB111 Mathematics in Biology

February 22, 2026

http://mcb111.org/w06/w06-lecture.html
Has some nice textbook downloads – e.g.
http://mcb111.org/w06/KollerFriedman.pdf

QT:{{”
There are many good books to learn about probabilistic models. “Probabilistic graphical models: principles and techniques” (by Koller & Friedman) is a comprehensive source about more general probabilistic models than the one we are going to study here.
“}}
Subset of chap 7 focuses on GMRF

NYTimes: A.I. Is Coming to Class. These Professors Want to Ease Your Worries.

February 14, 2026

https://www.nytimes.com/2026/01/17/nyregion/ai-college-classes.html

UW-Madison BMI/CS 776 Advanced Bioinformatics

February 14, 2026

course website
https://www.biostat.wisc.edu/bmi776/
and https://www.biostat.wisc.edu/bmi776/syllabus.html

canvas for intro bioinformatics. This was the previous website in 2017, https://www.biostat.wisc.edu/bmi576/syllabus.html

CourseTable

January 4, 2026

https://coursetable.com/catalog?selectSortBy=overall&searchText=s%26ds&sortOrder=desc

Reconciling modern machine-learning practice and the classical bias–variance trade-off | PNAS

May 19, 2025

“double descent”

https://www.pnas.org/doi/10.1073/pnas.1903070116

Suffix Array and BWT Explaination

May 18, 2025

The book with a nice explanation of suffix array and BWT is
Bioinformatics Algorithms: An Active Learning Approach by Phillip Compeau & Pavel Pevzner. https://www.bioinformaticsalgorithms.org/

A Step By Step Guide To Implement Naive Bayes In R | by Sahiti Kappagantula | Edureka | Medium

March 2, 2025

https://medium.com/edureka/naive-bayes-in-r-37ca73f3e85c

Smith–Waterman algorithm – Wikipedia

February 19, 2025

https://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm