Posts Tagged ‘cbb752’
This Person Does Not Exist – Random Face Generator
April 3, 2022Google Colab intro/resources
August 29, 2021Here is a google colab notebook that runs you through the basics of using colab notebooks:
https://colab.research.google.com/notebooks/basic_features_overview.ipynb
This one is a comprehensive basic python tutorial. One can learn python without reading a book, or even installing python on your own system (good for someone who knows basic programming, but not python language).
https://colab.research.google.com/github/cs231n/cs231n.github.io/blob/master/python-colab.ipynb
Maybe the most impressive thing you can run on google colab now is the AlphaFold2 code, fold any protein for free.
https://colab.research.google.com/github/deepmind/alphafold/blob/main/notebooks/AlphaFold.ipynb
Michael Levitt on Twitter: “Need advice on good Python books & courses. Learned FORTRAN from the IBM FORTRAN II manual in 1967; learned C from Kernighan & Ritchie in 1980; learned Perl from my postdocs @MarkGerstein & St even Brenner in 1995; learned Excel from @john_walkenbach in 2010. Thanks🙏” / Twitter
August 27, 2021https://twitter.com/MLevitt_NP2013/status/1431106728230326276
This is a great educational thread! I’ll bookmark it & keep in mind some of the suggestions for my bioinformatics class, which has now moved completely to python.
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In particular, I’d 2nd the recommendation for this tutorial
(http://docs.python.org/tutorial), https://tutorialspoint.com/python (from @RolandDunbrack) & the O’Reilly books (from @vajkaat & @Ceaza10).
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One additional thing: if you like Perl & Excel, you’ll love GAS (Google apps script, https://developers.google.com/apps-script), which provides a way to program with standard Javascript on top of Google sheets.
Reconciling modern machine-learning practice and the classical bias–variance trade-off
May 31, 2021QT:{{“U-shaped bias–variance trade-off curve has shaped our view of model selection and directed applications of learning algorithms in practice. “}}
Nice discussion of the limitations of the bias-variance tradeoff for #DeepLearning
https://www.pnas.org/content/116/32/15849
Course Demand Statistics for CBB752
January 18, 2020’12: 27 => 20 (spring)
’12: 25 => 21 (fall)
’14: 33 => 25
’15: 27 => 18
’16: 29 => 18
’17: 26 => 23
’18: 57 => 43
’19: 39 => 24
’20: 57 => ??
Bayesian Networks | December 2010 | Communications of the ACM
January 4, 2020Midsummer Course Sharpens Skills in Informatics and Data Science | Yale School of Medicine
August 11, 2019Introduction to Proteins: Course presentations and more
June 30, 2019… all presentations, tables, animations, and exercises of the second edition of Introduction to Proteins: Structure, Function, and Motion are now freely available in the new book website:
http://ibis.tau.ac.il/wiki/nir_bental/index.php/Introduction_to_Proteins_Book
Excellent review for cbb752 students
March 31, 2019Balanced perspective on history and future of genomic medicine by Jay Shendure https://www.cell.com/cell/fulltext/S0092-8674(19)30152-7
linkstream2 microblog 