Archive for the 'SciLit' Category

Review: Computational methods for allele-specific expression in single cells

August 17, 2024

https://www.sciencedirect.com/science/article/pii/S0168952524001690?via%3Dihub

2302.04265 PFGM++: Unlocking the Potential of Physics-Inspired Generative Models

August 11, 2024

https://arxiv.org/abs/2302.04265

thought this was interesting

Xu, Y., Liu, Z., Tian, Y., Tong, S., Tegmark, M., & Jaakkola, T. (2023, February 8). PFGM++: Unlocking the potential of
Physics-Inspired Generative Models. arXiv.org.
https://arxiv.org/abs/2302.04265

Detecting hallucinations in large language models using semantic entropy | Nature

August 11, 2024

https://www.nature.com/articles/s41586-024-07421-0

Farquhar, S., Kossen, J., Kuhn, L., & Gal, Y. (2024). Detecting hallucinations in large language models using semantic entropy. Nature, 630(8017), 625–630. https://doi.org/10.1038/s41586-024-07421-0

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models | Bioinformatics | Oxford Academic

July 28, 2024

Nallapareddy, V., Bordin, N., Sillitoe, I., Heinzinger, M., Littmann, M., Waman, V. P., Sen, N., Rost, B., & Orengo, C. (2023). CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. Bioinformatics, 39(1).
https://doi.org/10.1093/bioinformatics/btad029

https://academic.oup.com/bioinformatics/article/39/1/btad029/6989624

Single-cell multiregion dissection of Alzheimer’s disease | Nature

July 24, 2024

https://www.nature.com/articles/s41586-024-07606-7

Induction of social contagion for diverse outcomes in structured experiments in isolated villages | Science

May 3, 2024

https://www.science.org/doi/10.1126/science.adi5147

Honduras !

Genetic predisposition, modifiable lifestyles, and their joint effects on human lifespan: evidence from multiple cohort studies | BMJ Evidence-Based Medicine

April 30, 2024

https://ebm.bmj.com/content/early/2024/04/16/bmjebm-2023-112583

QT:{{”
Interesting that “alcohol consumption” didn’t rank in the study’s “top 4” lifestyle features. Wonder if this is because it potentially overlaps somewhat with two of the other features (diet & body shape). “}}

Genetic predisposition, modifiable lifestyles, and their joint effects on human lifespan: evidence from multiple cohort studies FREE

http://orcid.org/0000-0002-2628-7535Zilong Bian1,2, Lijuan Wang1,3, Rong Fan1,2, Jing Sun1, Lili Yu1, Meihong Xu4, Paul R H J Timmers3,5, Xia Shen6, James F Wilson3,5, Evropi Theodoratou3,7, Xifeng Wu1,8, Xue Li1,3

2403.05881 KG-Rank: Enhancing Large Language Models for Medical QA with Knowledge Graphs and Ranking Techniques

April 21, 2024

https://arxiv.org/abs/2403.05881

https://www.nature.com/articles/s41598-024-55742-x

April 7, 2024

Parada-Cabaleiro, E., Mayerl, M., Brandl, S., Skowron, M., Schedl, M., Lex, E., & Zangerle, E. (2024). Song lyrics have become simpler and more repetitive over the last five decades. Scientific Reports (Nature Publishing Group), 14(1). https://doi.org/10.1038/s41598-024-55742-x

DriverMAPS paper

March 29, 2024

https://www.nature.com/articles/s41467-019-11284-9