https://www.biorxiv.org/content/10.1101/2020.03.15.992750v2
https://twitter.com/michaelhoffman/status/1255222686646747136 swap paper
Posts Tagged ‘entex’
Detecting sample swaps in diverse NGS data types using linkage disequilibrium | bioRxiv
April 29, 2020Comparing tads across samples
April 6, 2020newly published tool
TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription
Guangyu Wang, Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao, Yanqiang Li, Xin Wang, Lili Zhang, John P. Cooke, Qi Cao & Kaifu Chen
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-01992-7
Paper of interest
February 1, 2020https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6516-1
The effects of common structural variants on 3D chromatin structure
Omar Shanta, Amina Noor, Human Genome Structural Variation Consortium (HGSVC) & Jonathan Sebat
BMC Genomics volume 21, Article number: 95 (2020)
Tobacco smoking and somatic mutations in human bronchial epithelium
February 1, 2020https://www.nature.com/articles/s41586-020-1961-1
Tobacco smoking and somatic mutations in human bronchial epithelium
Kenichi Yoshida, Kate H. C. Gowers, Henry Lee-Six, Deepak P. Chandrasekharan, Tim Coorens, Elizabeth F. Maughan, Kathryn Beal, Andrew Menzies, Fraser R. Millar, Elizabeth Anderson, Sarah E. Clarke, Adam Pennycuick, Ricky M. Thakrar, Colin R. Butler, Nobuyuki Kakiuchi, Tomonori Hirano, Robert E. Hynds, Michael R. Stratton, Iñigo Martincorena, Sam M. Janes & Peter J. Campbell
DNA methylation age of human tissues and cell types | Genome Biology | Full Text
October 26, 2019Published: 10 December 2013
DNA methylation age of human tissues and cell types
Steve Horvath
Genome Biology volume 14, Article number: 3156 (2013)
https://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-10-r115
GWAS ATLAS resource
August 24, 2019A global overview of pleiotropy and genetic architecture in complex traits
Kyoko Watanabe, Sven Stringer, Oleksandr Frei, Maša Umićević Mirkov, Christiaan de Leeuw, Tinca J. C. Polderman, Sophie van der Sluis, Ole A. Andreassen, Benjamin M. Neale & Danielle Posthuma
Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function.
August 18, 2019Single Cell Resource for Mouse
August 2, 2019QT:{{”
Tabula Muris is a compendium of single cell transcriptome data from the model organism Mus musculus, containing nearly 100,000 cells from 20 organs and tissues. The data allow for direct and controlled comparison of gene expression in cell types shared between tissues, such as immune cells from distinct anatomical locations. They also allow for a comparison of two distinct technical approaches: “}}
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