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Posts Tagged ‘j0mg’
Cost of living
March 3, 2020Job add sites for higher education
February 3, 2020Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data: Biophysical Journal
August 18, 2018Modeling RNA Secondary Structure with Sequence Comparison &
Experimental Mapping Data
https://www.Cell.com/biophysj/fulltext/S0006-3495(17)30689-6 combines TurboFold sec. structure prediction w/ results of SHAPE assays
Zhen Tan
Gaurav Sharma
David H. Mathews
Open Archive Published:July 20, 2017
DOI:https://doi.org/10.1016/j.bpj.2017.06.039
How to sail smoothly from academia to industry
April 21, 2018How to sail smoothly from academia to industry
http://www.nature.com/articles/d41586-018-03306-1 Teamwork is key. Perhaps this should be emphasized more in graduate training? #Jobs QT:{{”
“When immuno-oncologist Martijn Bijker decided to move from academia to industry, he asked a friend to review his CV. His friend — who had worked in the pharmaceutical sector for two decades — told him to relegate his lists of publications, posters and presentations to the back of the document. The focus, he said, should be on teamwork skills and the ability to perform the job requirements.”
“}}
Multistep nucleation of nanocrystals in aqueous solution : Nature Chemistry : Nature Research
October 1, 2017Multistep nucleation of nanocrystals in…solution
http://www.Nature.com/nchem/journal/v9/n1/full/nchem.2618.html Creation of Au-Au pair, expelling water, drives cluster formation
QT:{{”
To explain how the gold-rich aqueous phase forms and breaks down in Figures 1A and 2A, we
performed ab-initio calculations of a hydrated gold atom pair (Figure 4). This hydrated atom pair
becomes ionized when brought closer together: the left gold atom plus two nearby water molecules
form a linear cationic coordination complex, [Au(H2O)2]+1, while the right gold atom becomes an
anion surrounded by a simple hydration shell. Other (square planar and linear) complexes involving
chloride and hydroxide ligands may also participate, depending on pH (26, 33) (Section SI2). For
nanoclusters to form inside the gold-rich aqueous phase, pairs of gold atoms within it must be partially
dehydrated. In our calculations (Figure 4), this dehydration is delayed by a 7.6 kcal/mol (12.9 kBT)
energy barrier required to breakdown the linear cationic complex (close to the gold anion).
“}}
PLOS Computational Biology: PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations
November 28, 2016PredictSNP…Consensus Classifier for Prediction of Disease-Related
Mutations http://journals.PLOS.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003440 Demo of various #ensemble approaches
PLOS Computational Biology: PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions
October 9, 2016PredictSNP2: A Unified Platform http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004962 Ensembles many scores for the impact of non-coding variants, including #FunSeq
PLOS Computational Biology: Catalysis of Protein Folding by Chaperones Accelerates Evolutionary Dynamics in Adapting Cell Populations
December 18, 2015Folding by Chaperones Accelerates Evolutionary Dynamics
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003269 Multiscale models link NT mutations, PPIs & cell populations
Thermodynamics of Antimicrobial Lipopeptide Binding to Membranes: Origins of Affinity and Selectivity: Biophysical Journal
November 15, 2015#Thermodynamics of Antimicrobial Lipopeptide Binding to Membranes http://www.cell.com/biophysj/abstract/S0006-3495(14)00928-X Non-human selectivity studied w. coarse-grained MD
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