Archive for the 'SciLit' Category

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Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution – ScienceDirect

November 25, 2022

https://www.sciencedirect.com/science/article/pii/S0092867422012582

https://twitter.com/ry_lister/status/1587101557010489344

Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution
Author links open overlay panelCharles A.Herring1210Rebecca
K.Simmons1210SaskiaFreytag1210DanielPoppe1210Joel
J.D.Moffet1JahnviPflueger12SamBuckberry12Dulce
B.Vargas-Landin12OlivierClément12Enrique GoñiEcheverría1Gavin J.Sutton3AlbaAlvarez-Franco4RuiHou1ChristianPflueger12KerrieMcDonald5Jose M.Polo67Alistair R.R.Forrest1Anna K.Nowak8…RyanLister1211

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VOC(volatile organic compounds) in mask

November 20, 2022

Interesting article that implies one should “air out” a mask prior to wearing it (to get rid of toxic VOCs). For an N95, this requires 6 hrs.

Highly Time-Resolved and Nontargeted Characterization of Volatile Organic Compound Emissions from Face Masks

voc emission from a mask:
https://pubs.acs.org/doi/pdf/10.1021/acs.estlett.2c00524

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Uncovering motif interactions from convolutional-attention networks for genomics

November 20, 2022

https://openreview.net/pdf?id=ITOQhccyRsk

An interesting work that improves the interpretability of TF binding predictors with minimal network design.

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Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

November 8, 2022

interesting – is there a dataset ?

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6954276/

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A comprehensive SARS-CoV-2–human protein–protein interactome reveals COVID-19 pathobiology and potential hos t therapeutic targets | Nature Biotechnology

October 16, 2022

https://www.nature.com/articles/s41587-022-01474-0

A comprehensive SARS-CoV-2–human protein–protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets Yadi Zhou, Yuan Liu, Shagun Gupta, Mauricio I. Paramo, Yuan Hou, Chengsheng Mao, Yuan Luo, Julius Judd, Shayne Wierbowski, Marta Bertolotti, Mriganka Nerkar, Lara Jehi, Nir Drayman, Vlad Nicolaescu, Haley Gula, Savaş Tay, Glenn Randall, Peihui Wang, John T. Lis, Cédric Feschotte, Serpil C. Erzurum, Feixiong Cheng & Haiyuan Yu

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Deep learning guided optimization of human antibody against SARS-CoV-2 variants with broad neutralization

October 13, 2022

https://www.pnas.org/doi/10.1073/pnas.2122954119

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Characteristics of Electric Scooter and Bicycle Injuries After Introduction of Electric Scooter Rentals in Oslo, Norway | Public Health | JAMA Network Open | JAMA Network

September 30, 2022

Emphasizes the dangers of unrestricted scooter use for pedestrians & the value of speed limits….
https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2795144

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Epigenetic inheritance at the agouti locus in the mouse | Nature Genetics

September 24, 2022

https://www.nature.com/articles/ng1199_314

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ENCODE Pilot Participants

September 24, 2022

found this:

https://authors.library.caltech.edu/74915/2/Feingold.SOM.DC1.pdf

It’s from this paper:

Feingold, E. A. and Pachter, L. (2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science, 306 (5696). pp. 636-640. ISSN 0036-8075. doi:10.1126/science.1105136.
https://resolver.caltech.edu/CaltechAUTHORS:20170308-133717579

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Does coffee increase cancer risk? | Interviews | Naked Scientists

September 16, 2022

Liked the discussion of the paper by @stevesphd on Coffee Consumption
& Cancer Risk (https://clinicalnutritionjournal.com/article/S0261-5614(22)00313-2/fulltext). However, I was surprised that the elevation of stomach acid & GERD from caffeine was not mentioned as a potential reason for the association with esophageal cancer.

https://www.thenakedscientists.com/podcasts/naked-scientists-podcast/covid-vaccines-and-coffee-cups-hot-water

https://twitter.com/stevesphd

https://twitter.com/NakedScientists/status/1566387990330765312

ORIGINAL ARTICLE| VOLUME 41, ISSUE 10, P2113-2123, OCTOBER 01, 2022

Coffee consumption and cancer risk: a Mendelian randomisation study

Paul Carter
Shuai Yuan
Siddhartha Kar
Amy M. Mason
Stephen Burgess
Susanna C. Larsson

Published: August 24, 2022

DOI:https://doi.org/10.1016/j.clnu.2022.08.019

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