Archive for the 'SciLit' Category

The complete sequence of a human genome

April 10, 2022

https://www.science.org/doi/10.1126/science.abj6987

Congratulations. Looking forward to mapping trillions of reads against CHM13!

Identification of cell types from single cell data using stable clustering | Scientific Reports

March 27, 2022

https://www.nature.com/articles/s41598-020-66848-3

uses dbscan

Invitation: Group Presentation by TXL //=NEXT-in-list, LAB-ATTEND! – … @ Fri Jan 14, 2022 12pm – 1:30pm (EST) (all)

March 6, 2022

Neural Distance Embeddings for Biological Sequences

Gabriele Corso, Rex Ying, Michal Pándy, Petar Veličković, Jure Leskovec, Pietro Liò

abs: https://arxiv.org/abs/2109.09740
github: https://github.com/gcorso/NeuroSE
https://arxiv.org/pdf/2109.09740.pdf
https://proceedings.neurips.cc/paper/2021/file/9a1de01f893e0d2551ecbb7ce4dc963e-Paper.pdf

Updated invitation: Group Presentation by SP //=NEXT-in-list, LAB-ATTEND! – g… @ Fri Feb 4, 2022 10:30am – 12pm (EST) (all)

March 1, 2022

Liked the extensive scATAC-seq analysis. We discussed this in a journal club.

https://www.nature.com/articles/s41586-021-03209-8
Single-cell epigenomics reveals mechanisms of human cortical development

Ryan S. Ziffra, Chang N. Kim, Jayden M. Ross, Amy Wilfert, Tychele N. Turner, Maximilian Haeussler, Alex M. Casella, Pawel F. Przytycki, Kathleen C. Keough, David Shin, Derek Bogdanoff, Anat Kreimer, Katherine S. Pollard, Seth A. Ament, Evan E. Eichler, Nadav Ahituv & Tomasz J. Nowakowski
Nature volume 598, pages 205–213 (2021)

Bayesian integration in sensorimotor learning | Nature

February 20, 2022

https://www.nature.com/articles/nature02169

Bayesian integration in sensorimotor learning | Nature

February 20, 2022

https://www.nature.com/articles/nature02169

Pedestrian dynamics at the running of the bulls evidence an inaccessible region in the fundamental diagram | PNAS

February 12, 2022

https://www.pnas.org/content/118/50/e2107827118

science

January 29, 2022

eQTLs paper is out in Nature Genetics:

Zeng, B., Bendl, J., Kosoy, R. et al. [Panos R] Multi-ancestry eQTL meta-analysis of human brain identifies candidate causal variants for brain-related traits. Nat Genet (2022).
https://doi.org/10.1038/s41588-021-00987-9

High-performance brain-to-text communication via handwriting | Nature

January 10, 2022

https://www.nature.com/articles/s41586-021-03506-2

The power of genetic diversity in genome-wide association studies of lipids | Nature

January 10, 2022

https://www.nature.com/articles/s41586-021-04064-3

some focus on its main method
MR-MEGA
https://academic.oup.com/hmg/article/26/18/3639/3976569