Posts Tagged ‘dw’


January 8, 2022

Published: 05 January 2022
Decoding gene regulation in the fly brain
Jasper Janssens, Sara Aibar, Ibrahim Ihsan Taskiran, Joy N. Ismail, Alicia Estacio Gomez, Gabriel Aughey, Katina I. Spanier, Florian V. De Rop, Carmen Bravo González-Blas, Marc Dionne, Krista Grimes, Xiao Jiang Quan, Dafni Papasokrati, Gert Hulselmans, Samira Makhzami, Maxime De Waegeneer, Valerie Christiaens, Tony Southall & Stein Aerts Nature (2022)

Nature paper today on Fly brain GRNs,

Some integrative analyses might be useful…

neuroDEVELOPMENTS: Neuroscience Research to Clinical Relevance

March 31, 2019

the Lieber’s neuroDEVELOPMENTS newsletter, which features the PsychENCODE paper

Read Light Up Your Imagination Argus Large Poster by Trend Enterprises: Language Arts:

February 15, 2019

Nature 03142018 Single cell rnaseq of development of human brain Pfc

March 18, 2018

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

Suijuan Zhong
, Shu Zhang
Xiaoqun Wang

New GWAS SCZ loci (nature genetics 2018)

March 5, 2018

Common #schizophrenia alleles are enriched in mutation-intolerant genes & in regions under strong background selection 50 novel SCZ loci & 145 loci in total, from #GWAS – associated w/ 33 candidate causal genes

We report a new genome-wide association study of schizophrenia (11,260 cases and 24,542 controls), and through meta-analysis with existing data we identify 50 novel associated loci and 145 loci in total. Through integrating genomic fine-mapping with brain expression and chromosome conformation data, we identify candidate causal genes within 33 loci.

Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection
Nature Genetics (2018)

A survey of human brain transcriptome diversity at the single cell level

June 27, 2017

Brain #transcriptome diversity at the single cell level Has useful gene-exp. profiles of specific neural cell types

has profiles for 185 biomarker genes for 6 cell types

R package: variancePartition

November 13, 2016

new tool in psychencode meeting

Authorship solution

July 28, 2016

A solution to a perennial problem: Co-first “author ordering determined by coin flip” – eg &

∗Equal contribution. Author ordering determined by coin flip over a Google Hangout.

Similarity network fusion for aggregating data types on a genomic scale : Nature Methods : Nature Publishing Group

February 9, 2016

Similarity #network fusion for aggregating data types Combines mRNA, miRNA & gene fusions to classify cancer subtypes

Single-cell ChIP-seq

October 23, 2015

#Singlecell ChIPseq reveals…subpopulations defined by chromatin state Sparse data: on order of 1K uniq. reads/cell