Archive for the 'SciLit' Category

DNA methylation age of human tissues and cell types | Genome Biology | Full Text

October 26, 2019

Published: 10 December 2013
DNA methylation age of human tissues and cell types
Steve Horvath
Genome Biology volume 14, Article number: 3156 (2013)

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-10-r115

New cell type analysis in human cortex

October 26, 2019

Published: 21 August 2019

Conserved cell types with divergent features in human versus mouse cortex

Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Brian Long, Nelson Johansen, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz P. Levi, Soraya I. Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard G. Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder P. Gwinn, Daniel Hirschstein, C. Dirk Keene, Mohamed Keshk, Andrew L. Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey G. Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya V. Shapovalova, Saroja
Somasundaram, Aaron Szafer, Elliot R. Thomsen, Michael Tieu, Gerald Quon, Richard H. Scheuermann, Rafael Yuste, Susan M. Sunkin, Boudewijn Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John W. Phillips, Bosiljka Tasic, Hongkui Zeng, Allan R. Jones, Christof Koch & Ed S. Lein

https://www.nature.com/articles/s41586-019-1506-7

Google’s quantum supremacy

October 26, 2019

https://youtu.be/-ZNEzzDcllU
https://www.nature.com/articles/s41586-019-1666-5

A primer on deep learning in genomics | Nature Genetics

October 20, 2019

A primer on deep learning in genomics | Nature Genetics
https://www.nature.com/articles/s41588-018-0295-5
James Zou, Mikael Huss, Abubakar Abid, Pejman Mohammadi, Ali Torkamani & Amalio Telenti
Nature Genetics volume 51, pages12–18 (2019)

Vinclozolin induced epigenetic transgenerational inheritance of pathologies and sperm epimutation biomarkers for specific diseases

October 20, 2019

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0202662

Vinclozolin induced epigenetic transgenerational inheritance of pathologies and sperm epimutation biomarkers for specific diseases Eric Nilsson,Stephanie E. King,Margaux McBirney,Deepika
Kubsad,Michelle Pappalardo,Daniel Beck,Ingrid Sadler-Riggleman,Michael K. Skinner

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

October 14, 2019

https://www.nature.com/articles/s41592-019-0575-8

Published: 07 October 2019

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

Tristan Bepler, Andrew Morin, Micah Rapp, Julia Brasch, Lawrence Shapiro, Alex J. Noble & Bonnie Berger

Nature Methods (2019)

High Time for Human Height

October 12, 2019

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4269490/

Perit Dial Int. 2014 Nov-Dec; 34(7): 685–686.
doi: 10.3747/pdi.2014.00272
PMCID: PMC4269490
PMID: 25520478
Olivier Devuyst, Deputy Editor

Genome partitioning of genetic variation for height from 11,214 sibling pairs. – PubMed – NCBI

October 12, 2019

https://www.ncbi.nlm.nih.gov/pubmed/17924350

Am J Hum Genet. 2007 Nov;81(5):1104-10. Epub 2007 Oct 1.
Genome partitioning of genetic variation for height from 11,214 sibling pairs. Visscher PM1, Macgregor S, Benyamin B, Zhu G, Gordon S, Medland S, Hill WG, Hottenga JJ, Willemsen G, Boomsma DI, Liu YZ, Deng HW, Montgomery GW, Martin NG.

The Future of Genetic Studies of Complex Human Diseases | Science

October 12, 2019

https://science.sciencemag.org/content/273/5281/1516

Neil Risch, Kathleen Merikangas
proposed gwas

Complement Factor H Polymorphism in Age-Related Macular Degeneration | Science

October 12, 2019

https://science.sciencemag.org/content/308/5720/385.long

Robert J. Klein1, Caroline Zeiss2,*, Emily Y. Chew3,*, Jen-Yue Tsai4,*, Richard S. Sackler1, Chad Haynes1, Alice K. Henning5, John Paul SanGiovanni3, Shrikant M. Mane6, Susan T. Mayne7, Michael B. Bracken7, Frederick L. Ferris3, Jurg Ott1, Colin Barnstable2, Josephine Hoh7,†

see https://plu.mx/mtsinai/u/rklein