https://www.nature.com/articles/s41592-023-01969-x
Bunne, C., Stark, S. G., Gut, G., Del Castillo, J. S., Levesque, M., Lehmann, K., Pelkmans, L., Krause, A., & Rätsch, G. (2023). Learning single-cell perturbation responses using neural optimal transport. Nature Methods, 20(11), 1759–1768.
https://doi.org/10.1038/s41592-023-01969-x
not so useful for learning OT
https://www.science.org/doi/10.1126/science.adg7492
Cheng, J., Novati, G., Pan, J., Bycroft, C., Žemgulytė, A., Applebaum, T., Pritzel, A., Wong, L. H., Zielinski, M., Sargeant, T., Schneider, R. G., W, A., Senior, Jumper, J., Hassabis, D., Kohli, P., & Avsec, Ž. (2023). Accurate proteome-wide missense variant effect prediction with AlphaMissense. Science, 381(6664).
https://doi.org/10.1126/science.adg7492
https://www.nature.com/articles/s41567-022-01652-6
Murphy, T. W. (2022). Limits to economic growth. Nature Physics, 18(8), 844–847. https://doi.org/10.1038/s41567-022-01652-6
https://www.science.org/doi/10.1126/sciadv.adh8263
QT:{{”
Many volatile organic compounds (VOCs) persisted days following the smoke injection, providing a longer-term exposure pathway for humans….These rates imply that vapor pressure controls partitioning behavior and that house ventilation plays a minor role in removing smoke VOCs. However, surface cleaning activities (vacuuming, mopping, and dusting) physically removed surface reservoirs and thus reduced indoor smoke VOC concentrations more effectively than portable air cleaners and more persistently than window opening.
“}}
https://pubs.acs.org/doi/10.1021/jacs.4c10244
Riesel, E. A., Mackey, T., Nilforoshan, H., Xu, M., Badding, C. K., Altman, A. B., Leskovec, J., & Freedman, D. E. (2024). Crystal Structure Determination from Powder Diffraction Patterns with Generative Machine Learning. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.4c10244
seems to use a form of “steered diffusion” to match the powder pattern
https://www.pnas.org/doi/10.1073/pnas.2313581121
Kogan, V., Molodtsov, I., Fleyshman, D. I., Leontieva, O. V., Koman, I. E., & Gudkov, A. V. (2024). The reconstruction of evolutionary dynamics of processed pseudogenes indicates deep silencing of “retrobiome” in naked mole rat. Proceedings of the National Academy of Sciences, 121(45). https://doi.org/10.1073/pnas.2313581121
https://www.nature.com/articles/s43586-022-00188-6
Nature Reviews Methods Primers
Aguet, F., Alasoo, K., Li, Y. I., Battle, A., Im, H. K., Montgomery, S. B., & Lappalainen, T. (2023). Molecular quantitative trait loci. Nature Reviews Methods Primers, 3(1).
https://doi.org/10.1038/s43586-022-00188-6
from podcast
QT:{{”
….Okay. So when you got measurements from this big group
of people, you end up
with kind of a range of water turnover and it varies by person and location. So how does this range
that you measured in this diverse group of people? How does it stack up with eight, eight ounce
glasses a day, which is like two liters of water a day, that recommendation we discussed?
Most people are not going to need to drink, eight
glasses of water a day, two liters of
water a day. If you measure how much water flows through your body, how much water comes in
and goes out every day, there’s a lot of variation, but it’s something like three to four liters a day
total. And that includes not just the water that you drink, but that includes the water that’s in the
food that you eat.
“}}
linkstream2 microblog 