Archive for the 'SciLit' Category
Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer | Nature Communications
November 20, 2024Crystal Structure Determination from Powder Diffraction Patterns with Generative Machine Learning | Journal of the American Chemical Society
November 14, 2024https://pubs.acs.org/doi/10.1021/jacs.4c10244
Riesel, E. A., Mackey, T., Nilforoshan, H., Xu, M., Badding, C. K., Altman, A. B., Leskovec, J., & Freedman, D. E. (2024). Crystal Structure Determination from Powder Diffraction Patterns with Generative Machine Learning. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.4c10244
seems to use a form of “steered diffusion” to match the powder pattern
The reconstruction of evolutionary dynamics of processed pseudogenes indicates deep silencing of “retrobiome ” in naked mole rat | PNAS
November 10, 2024https://www.pnas.org/doi/10.1073/pnas.2313581121
Kogan, V., Molodtsov, I., Fleyshman, D. I., Leontieva, O. V., Koman, I. E., & Gudkov, A. V. (2024). The reconstruction of evolutionary dynamics of processed pseudogenes indicates deep silencing of “retrobiome” in naked mole rat. Proceedings of the National Academy of Sciences, 121(45). https://doi.org/10.1073/pnas.2313581121
Molecular quantitative trait loci | Nature Reviews Methods Primers
November 10, 2024https://www.nature.com/articles/s43586-022-00188-6
Nature Reviews Methods Primers
Aguet, F., Alasoo, K., Li, Y. I., Battle, A., Im, H. K., Montgomery, S. B., & Lappalainen, T. (2023). Molecular quantitative trait loci. Nature Reviews Methods Primers, 3(1).
https://doi.org/10.1038/s43586-022-00188-6
Variation in human water turnover associated with environmental and lifestyle factors | Science
November 10, 2024from podcast
QT:{{”
….Okay. So when you got measurements from this big group
of people, you end up
with kind of a range of water turnover and it varies by person and location. So how does this range
that you measured in this diverse group of people? How does it stack up with eight, eight ounce
glasses a day, which is like two liters of water a day, that recommendation we discussed?
Most people are not going to need to drink, eight
glasses of water a day, two liters of
water a day. If you measure how much water flows through your body, how much water comes in
and goes out every day, there’s a lot of variation, but it’s something like three to four liters a day
total. And that includes not just the water that you drink, but that includes the water that’s in the
food that you eat.
“}}
Tumour evolution and microenvironment interactions in 2D and 3D space | Nature
November 10, 2024https://www.nature.com/articles/s41586-024-08087-4
Mo, C., Liu, J., Chen, S., Storrs, E., Da Costa, A. L. N. T., Houston, A., Wendl, M. C., Jayasinghe, R. G., Iglesia, M. D., Ma, C., Herndon, J. M., Southard-Smith, A. N., Liu, X., Mudd, J., Karpova, A., Shinkle, A., Goedegebuure, S. P., Abdelzaher, A. T. M. A., Bo, P., . . . Ding, L. (2024). Tumour evolution and microenvironment interactions in 2D and 3D space. Nature, 634(8036), 1178–1186.
https://doi.org/10.1038/s41586-024-08087-4
Transformer-based protein generation with regularized latent space optimization | Nature Machine Intelligence
October 19, 2024https://www.nature.com/articles/s42256-022-00532-1
Castro, E., Godavarthi, A., Rubinfien, J., Givechian, K., Bhaskar, D., & Krishnaswamy, S. (2022). Transformer-based protein generation with regularized latent space optimization. Nature Machine Intelligence, 4(10), 840–851. https://doi.org/10.1038/s42256-022-00532-1
New large-scale QTL cohort
September 28, 2024A general basis for quarter-power scaling in animals | PNAS
September 22, 2024Lessons from the COVID-19 pandemic for ventilation and indoor air quality | Science
September 8, 2024https://www.science.org/doi/10.1126/science.adp2241
Morawska, L., Li, Y., & Salthammer, T. (2024). Lessons from the COVID-19 pandemic for ventilation and indoor air quality. Science, 385(6707), 396–401. https://doi.org/10.1126/science.adp2241
Also:
Funk, M. A., Ash, C., Smith, J., Uzogara, E., & Wible, B. (2024). Clearing the air. Science, 385(6707), 378–379.
doi.org/10.1126/science.adr4683
linkstream2 microblog 