Archive for the 'SciLit' Category

Tumour evolution and microenvironment interactions in 2D and 3D space | Nature

November 10, 2024

https://www.nature.com/articles/s41586-024-08087-4

Mo, C., Liu, J., Chen, S., Storrs, E., Da Costa, A. L. N. T., Houston, A., Wendl, M. C., Jayasinghe, R. G., Iglesia, M. D., Ma, C., Herndon, J. M., Southard-Smith, A. N., Liu, X., Mudd, J., Karpova, A., Shinkle, A., Goedegebuure, S. P., Abdelzaher, A. T. M. A., Bo, P., . . . Ding, L. (2024). Tumour evolution and microenvironment interactions in 2D and 3D space. Nature, 634(8036), 1178–1186.
https://doi.org/10.1038/s41586-024-08087-4

Transformer-based protein generation with regularized latent space optimization | Nature Machine Intelligence

October 19, 2024

https://www.nature.com/articles/s42256-022-00532-1

Castro, E., Godavarthi, A., Rubinfien, J., Givechian, K., Bhaskar, D., & Krishnaswamy, S. (2022). Transformer-based protein generation with regularized latent space optimization. Nature Machine Intelligence, 4(10), 840–851. https://doi.org/10.1038/s42256-022-00532-1

New large-scale QTL cohort

September 28, 2024

https://www.nature.com/articles/s41588-024-01896-3

A general basis for quarter-power scaling in animals | PNAS

September 22, 2024

https://www.pnas.org/doi/10.1073/pnas.1009974107#:~:text=So%20quarter%2Dpower%20scaling%20is,%2F12%20%3D%203%2F4.

Lessons from the COVID-19 pandemic for ventilation and indoor air quality | Science

September 8, 2024

https://www.science.org/doi/10.1126/science.adp2241

Morawska, L., Li, Y., & Salthammer, T. (2024). Lessons from the COVID-19 pandemic for ventilation and indoor air quality. Science, 385(6707), 396–401. https://doi.org/10.1126/science.adp2241

Also:

Funk, M. A., Ash, C., Smith, J., Uzogara, E., & Wible, B. (2024). Clearing the air. Science, 385(6707), 378–379.
doi.org/10.1126/science.adr4683

What makes blueberries blue, and myth buster Adam Savage on science communication | Science | AAAS

September 8, 2024

https://www.science.org/content/podcast/what-makes-blueberries-blue-and-myth-buster-adam-savage-science-communication

Self-assembled, disordered structural color from fruit wax bloom. (2024). Retrieved March 9, 2024, from Science Advances website: https://www.science.org/doi/10.1126/sciadv.Adk4219

Smooth muscle expression of RNA editing enzyme ADAR1 controls vascular integrity and progression of atherosclerosis | bioRxiv

September 8, 2024

Chad
https://www.biorxiv.org/content/10.1101/2024.07.08.602569v1

Evolution of a minimal cell | Nature

September 2, 2024

Moger-Reischer, R. Z., Glass, J. I., Wise, K. S., Sun, L.,
Bittencourt, D. M. C., Lehmkuhl, B. K., Schoolmaster, D. R., Lynch, M., & Lennon, J. T. (2023). Evolution of a minimal cell. Nature, 620(7972), 122–127. https://doi.org/10.1038/s41586-023-06288-x

https://www.nature.com/articles/s41586-023-06288-x

A 160 Gbp fork fern genome shatters size record for eukaryotes: iScience

August 31, 2024

https://www.cell.com/iscience/fulltext/S2589-0042(24)01111-8

https://www.cell.com/iscience/fulltext/S2589-0042(24)01111-8

https://doi.org/10.1016/j.isci.2024.109889

A Unification of Mediator, Confounder, and Collider Effects – PMC

August 31, 2024

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8967310/

MacKinnon, D. P., & Lamp, S. J. (2021). A unification of mediator, confounder, and collider effects. Prevention Science, 22(8), 1185–1193. https://doi.org/10.1007/s11121-021-01268-xMacKinnon, D. P., & Lamp, S. J. (2021). A unification of mediator, confounder, and collider effects. Prevention Science, 22(8), 1185–1193.
https://doi.org/10.1007/s11121-021-01268-x

QT:{{”
Third-variable effects are not distinguishable solely by statistical methods. Each third-variable effect can be fit to the same data, and if the relations between the variables are substantial, there will be evidence for each effect. In this sense, the confounder, mediator, and collider models are equivalent, providing an equal representation of the information contained in the data for three variables (Stelzl, 1986). Although mediation, confounding, and collision may equally explain the statistical associations among three variables, they describe different causal relations among those variables. Like much recent research on causal analysis, this paper highlights the centrality of the causal model underlying a research study and the important distinction between the causal model and the statistical model. The appropriate causal model is determined by prior empirical research and theory. The statistical analysis provides estimates for the proposed causal model.
“}}