Archive for the 'SciLit' Category

Is ecology explaining less and less?

September 15, 2014

Is #ecology explaining less & less? http://news.sciencemag.org/biology/2014/08/ecology-explaining-less-and-less Over 100yr & 18k papers: more #pvalues but falling <r2>. What’s P for this trend?

Biostatistics: iCluster | Memorial Sloan Kettering Cancer Center

September 10, 2014

simultaneously clustering of cancer data across data types, in a sense related to orthoclust
http://www.mskcc.org/research/epidemiology-biostatistics/biostatistics/icluster

PLOS Computational Biology: Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

September 10, 2014

http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003531

Constructing structural networks of signaling pathways on the proteome scale

September 6, 2014

Structural networks of signaling pathways
http://www.sciencedirect.com/science/article/pii/S0959440X1200070X Prism on IL10 #networks, mapping on Cosmic, disrupting mutations as drivers

What Can Article-Level Metrics Do for You?

September 1, 2014

What Can Article-Level Metrics Do for You
http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001687 Wide distribution of #cites for @PLOSBiology papers; median 19 but 10% >50

BMC Bioinformatics | Full text | BicSPAM: flexible biclustering using sequential patterns

August 31, 2014

Related to BIP KDD talk, dealing with overlapping biclusters http://www.biomedcentral.com/1471-2105/15/130

BMC Bioinformatics | Full text | BicSPAM: flexible biclustering using sequential patterns

August 31, 2014

http://www.biomedcentral.com/1471-2105/15/130

Genomics: Hiding in plain sight : Nature : Nature Publishing Group

August 31, 2014

http://www.nature.com/nature/journal/v512/n7515/full/512374a.html The Nature N&V

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

August 30, 2014

#Singlecell #RNAseq highlights intratumoral heterogeneity http://www.sciencemag.org/content/344/6190/1396.abs Subtype classifiers variably expressed across indiv. cells

Patel AP(1), Tirosh I(2), Trombetta JJ(2), Shalek AK(2), Gillespie SM(3),
Wakimoto H(4), Cahill DP(4), Nahed BV(4), Curry WT(4), Martuza RL(4), Louis
DN(5), Rozenblatt-Rosen O(2), Suvà ML(6), Regev A(7), Bernstein BE(8).

Published Online June 12 2014
Science 20 June 2014:
Vol. 344 no. 6190 pp. 1396-1401
DOI: 10.1126/science.1254257

Big Data and Its Technical Challenges | July 2014 | Communications of the ACM

August 30, 2014

#BigData & Its Technical Challenges
http://cacm.acm.org/magazines/2014/7/176204-big-data-and-its-technical-challenges/abstract Data acquisition, cleaning, aggregation, analysis, visualization & interpretation