Archive for the 'x78qt' Category

NYTimes.com: As 23andMe Struggles, Concerns Surface About Its Genetic Data

October 6, 2024

As 23andMe Struggles, Concerns Surface About Its Genetic Data

A plummet in the company’s valuation and a recent board resignation have raised questions about the future of genetic data collected from millions of customers.

https://www.nytimes.com/2024/10/05/business/23andme-dna-bankrupt.html?smid=em-share

QT:{{”
“People don’t, I think, appreciate how large the genetic information for a person is,” Mark Gerstein, a professor of biomedical informatics at Yale University, said on Saturday.
“In theory, if there’s a mess-up with your credit card or Social Security number, you get a new one, it can be fixed,” Professor Gerstein said. “But there’s absolutely no way to get a new genome.” …
Looking at a genome can reveal a complicated structure, akin to ones and zeros of binary code, Professor Gerstein said. That might make it seem like the information is harder to glean than from a personal tech device.
“Superficially, there might be a comforting aspect to that, as opposed to if I peek in your email box,” he said. However complex the genome is, though, it can still hold sensitive private data.
“In the longer term, maybe it actually is more revealing,” he said. “}}

Yale Daily News Reporting on YDCoE…

September 26, 2024

https://yaledailynews.com/blog/2024/09/25/new-yale-medical-center-advances-rare-disease-diagnosing/

New Yale Medical Center advances rare disease diagnosing
Doctors at the new Yale Diagnostic Center of Excellence seek methods to diagnose and treat rare diseases.

DAVIS ZONG 11:49 PM, SEP 25, 2024

LLMs predict protein phases | Nature Methods

September 10, 2024

https://www.nature.com/articles/s41592-024-02421-4

Singh, A. (2024). LLMs predict protein phases. Nature.
https://doi.org/10.1038/s41592-024-02421-4

Yale Study Finds Potential in Predicting Immunotherapy Outcomes in Patients with Melanoma < Pathology

September 1, 2024

https://medicine.yale.edu/pathology/news-article/yale-study-finds-potential-in-predicting-immunotherapy-outcomes-in-patients-with-melanoma/

Genetic predisposition, modifiable lifestyles, and their joint effects on human lifespan: evidence from multiple cohort studies | BMJ Evidence-Based Medicine

April 30, 2024

https://ebm.bmj.com/content/early/2024/04/16/bmjebm-2023-112583

QT:{{”
Interesting that “alcohol consumption” didn’t rank in the study’s “top 4” lifestyle features. Wonder if this is because it potentially overlaps somewhat with two of the other features (diet & body shape). “}}

Genetic predisposition, modifiable lifestyles, and their joint effects on human lifespan: evidence from multiple cohort studies FREE

http://orcid.org/0000-0002-2628-7535Zilong Bian1,2, Lijuan Wang1,3, Rong Fan1,2, Jing Sun1, Lili Yu1, Meihong Xu4, Paul R H J Timmers3,5, Xia Shen6, James F Wilson3,5, Evropi Theodoratou3,7, Xifeng Wu1,8, Xue Li1,3

How to Train a Biomedical Data Scientist < Yale School of Medicine

March 24, 2024

https://medicine.yale.edu/news-article/how-to-train-a-biomedical-data-scientist/

Emmett Shear ’05 briefly appointed OpenAI CEO amid chaotic turnover – Yale Daily News

December 11, 2023

https://yaledailynews.com/blog/2023/11/28/emmett-shear-05-briefly-appointed-openai-ceo-amid-chaotic-turnover/

QT:{{”
“The appointment, even if temporary, is significant both for Yale’s reputation and the tech community as a whole,” computer science professor Mark Gerstein wrote to the News. “Leaders in the tech industry serve as pivotal role models and inspirational figures for those pursuing technical professions.”
…
Gerstein said that Shear’s brief stint as OpenAI CEO is especially notable given Yale’s “limited presence in tech leadership” compared to peer schools such as Stanford University and Harvard University. “}}

Mark bio

October 22, 2023

https://academic.oup.com/bioinformatics/article/39/Supplement_1/i9/7210511

2023 ISCB accomplishments by a senior scientist award: Mark Gerstein Christiana N Fogg, Diane E Kovats, Martin Vingron
Bioinformatics, Volume 39, Issue Supplement_1, June 2023, Pages i9–i10, https://doi.org/10.1093/bioinformatics/btad316
Published: 30 June 2023

Yale News on ISMB Award

August 27, 2023

https://news.yale.edu/2023/08/01/mark-gerstein-receives-iscb-accomplishments-senior-scientist-award

Hospital and Drugmaker Move to Build Vast Database of New Yorkers’ DNA – The New York Times

August 13, 2022

QT:{{”
Mark Gerstein, a professor of Biomedical Informatics at Yale University, said there was no question that genomic datasets were driving great medical discoveries. But he said he still would not participate in one himself, and he urged people to consider whether adding their DNA to a database might someday affect their
grandchildren.

“I tend to be a worrier,” he said.

Our collective knowledge of mutations and what illnesses they are associated with — whether Alzheimer’s or schizophrenia — would only increase in the years ahead, he said. “If the datasets leaked some day, the information might be used to discriminate against the children or grandchildren of current participants,” Dr. Gerstein said. They might be teased or denied insurance, he added.

He noted that even if the data was anonymous and secure today, that could change. “Securing the information over long periods of time gets much harder,” he said, noting that Regeneron might not even exist in 50 years. “The risk of the data being hacked over such a long period of time becomes magnified,” he said.
“}}