Posts Tagged ‘from_wm’

peerage of science

September 13, 2018

Peerage of Science is a free, portable peer review service that gives initial feedback on manuscripts within 2-3 weeks of submission (and then final feedback after resubmission). Some journals have stated that they officially welcome reviews from Peerage of Science, including BMC Genomics, PLOS Biology, and PLOS One, although they reserve the right to conduct their own round of peer reviews in addition.

Data science in industry

September 5, 2018

A nice commentary on the role of data science in industry.

google releases dataset search

September 5, 2018

Conference at Yale on R for Medicine

August 3, 2018

R/Medicine 2018
About. The goal of the R/Medicine conference is to promote the use of the R programming environment and the R ecosystem in medical research and clinical practice.

Wikipedia shapes language in scientific papers

October 27, 2017

"Wikipedia is one of the world’s most popular websites, but scientists rarely cite it in their papers. Despite this, the online encyclopedia seems to be shaping the language that researchers use in papers, according to an experiment showing that words and phrases in recently published Wikipedia articles subsequently appeared more frequently in scientific papers"

“Thompson and co-author Douglas Hanley, an economist at the University of Pittsburgh in Pennsylvania, commissioned PhD students to write 43 chemistry articles on topics that weren’t yet on Wikipedia. In January 2015, they published a randomized set of half of the articles to the site. The other half, which served as control articles, weren’t uploaded.

Using text-mining techniques to measure the frequency of words, they found that the language in the scientific papers drifted over the study period as new terms were introduced into the field. This natural drift equated to roughly one new term for every 250 words, Thompson told Nature. On top of those natural changes in language over time, the authors found that, on average, another 1 in every 300 words in a scientific paper was influenced by language in the Wikipedia article.”


#Wikipedia shapes lang. in science Seeding it with new pages & watching them evolve (v ctrls) as a type of soc. expt

new nih grant limits

May 6, 2017

More info:

Is American Pet Health Care (Also) Uniquely Inefficient?

March 11, 2017

Is American Pet Health Care (Also) Uniquely Inefficient? High correlation betw. #healthcare costs for people & pets

Transmissible Dog Cancer Genome Reveals the Origin and History of an Ancient Cell Lineage | Science

March 4, 2017

Transmissible Dog Cancer Genome Reveals…History of an Ancient Cell Lineage After 11k yrs 2M SNVs & 646 genes KO’ed

Elizabeth P. Murchison1,2,*,†,
David C. Wedge1,*,
Ludmil B. Alexandrov1,
Beiyuan Fu1,
Inigo Martincorena1,
Zemin Ning1,
Jose M. C. Tubio1,
Emma I. Werner1,
Jan Allen3,
Andrigo Barboza De Nardi4,
Edward M. Donelan3,
Gabriele Marino5,
Ariberto Fassati6,
Peter J. Campbell1,
Fengtang Yang1,
Austin Burt7,
Robin A. Weiss6,
Michael R. Stratton1,†

+ See all authors and affiliations

Science 24 Jan 2014:
Vol. 343, Issue 6169, pp. 437-440
DOI: 10.1126/science.1247167

TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants | eLife

March 4, 2017

TP53 copy number expansion is associated w…enhanced DNA damage response in elephants 18 p53 retro- & pseudo- genes

Computational tools for cancer immunology : Computational genomics tools for dissecting tumour-immune cell interactions : Nature Reviews Genetics : Nature Research

February 24, 2017

Table 1: Computational tools for cancer immunology
FromComputational genomics tools for dissecting tumour–immune cell interactions
Hubert Hackl,
Pornpimol Charoentong,
Francesca Finotello
& Zlatko Trajanoski
Nature Reviews Genetics 17, 441–458 (2016) doi:10.1038/nrg.2016.67