Posts Tagged ‘fusionseq’

Looking for a tool to find fusion transcript — use Grep :)

June 28, 2014

The “Grep” Command But Not FusionMap, FusionFinder or ChimeraScan Captures the CIC-DUX4 Fusion Gene from Whole Transcriptome Sequencing Data on a Small Round Cell Tumor with t(4;19)(q35;q13)

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0099439

Three-Dimensional Genome Architecture Influences Partner Selection for Chromosomal Translocations in Human Disease

April 10, 2014

QT:"We show that many translocation-prone pairs of regions genome-wide, including the cancer translocation partners BCR-ABL and MYC-IGH, display elevated Hi-C contact frequencies in normal human cells."

Overlap of Hi-C & gene fusions

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0044196

Genome Biology | Full text | Identification of fusion genes in breast cancer by paired-end RNA-sequencing

February 28, 2014

http://genomebiology.com/2011/12/1/R6https://code.google.com/p/fusioncatcher