Posts Tagged ‘igvf’

IGVF Marker Paper

September 27, 2022

Marker paper examples, in no particular order. They have different ages, strengths/weaknesses, and describe different kinds of projects.

Human Biomolecular Atlas Program (HuBMAP)
https://pubmed.ncbi.nlm.nih.gov/31597973/

Human Cell Atlas (HCA)
https://pubmed.ncbi.nlm.nih.gov/33879355/

Human Pangenome Reference Consortium (HPRC)
https://pubmed.ncbi.nlm.nih.gov/35444317/

The NIH Extracellular RNA Communication Consortium (exRNA):
https://pubmed.ncbi.nlm.nih.gov/26320938/

Molecular Transducers of Physical Activity Consortium (Motrpac): https://pubmed.ncbi.nlm.nih.gov/32589957/

The NIH Somatic Cell Genome Editing program (SCGE)
https://pubmed.ncbi.nlm.nih.gov/33828315/

The Genotype-Tissue Expression (GTEx) project
https://pubmed.ncbi.nlm.nih.gov/23715323/

The ENCODE (ENCyclopedia Of DNA Elements) Project
https://pubmed.ncbi.nlm.nih.gov/15499007/

The NIH Roadmap Epigenomics Mapping Consortium
https://pubmed.ncbi.nlm.nih.gov/20944595/

The NIH Roadmap Epigenomics Program data resource
https://pubmed.ncbi.nlm.nih.gov/22690667/

The NIH Common Fund/Roadmap Epigenomics Program: Successes of a comprehensive consortium
https://pubmed.ncbi.nlm.nih.gov/31501771/

The 4D nucleome project (4DN)
https://pubmed.ncbi.nlm.nih.gov/28905911/

ENCODE Pilot Participants

September 24, 2022

found this:

https://authors.library.caltech.edu/74915/2/Feingold.SOM.DC1.pdf

It’s from this paper:

Feingold, E. A. and Pachter, L. (2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science, 306 (5696). pp. 636-640. ISSN 0036-8075. doi:10.1126/science.1105136.
https://resolver.caltech.edu/CaltechAUTHORS:20170308-133717579

Common Fund Data Ecosystem | NIH Common Fund

March 22, 2022

https://commonfund.nih.gov/dataecosystem

many logos

Stanford press release on IGVF

November 24, 2021

mentioned in the 2nd to the last paragraph.
https://med.stanford.edu/news/all-news/2021/11/researchers-grants-genome-variations.html

igvf awardees

September 9, 2021

https://www.genome.gov/Funded-Programs-Projects/Impact-of-Genomic-Variation-on-Function-Consortium#awardees