Archive for the 'SciLit' Category

Superspreading and the effect of individual variation on disease emergence | Nature

June 3, 2020

https://www.nature.com/articles/nature04153

J. O. Lloyd-Smith, S. J. Schreiber, P. E. Kopp & W. M. Getz
Nature volume 438, pages355–359(2005)

host-viral infection maps from sc-rna seq with a computational framework

June 2, 2020

Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients

https://www.sciencedirect.com/science/article/pii/S0092867420305687

host-viral infection maps from sc-rna seq with a computational framework

June 2, 2020

https://www.sciencedirect.com/science/article/pii/S0092867420305687

Mapping and characterization of structural variation in 17,795 human genomes

May 28, 2020

https://www.nature.com/articles/s41586-020-2371-0
think allele frequencies are publicly available

Travel From New York City Seeded Wave of U.S. Outbreaks

May 25, 2020

Here’s the paper in Cell
https://www.cell.com/pb-assets/products/coronavirus/CELL_CELL-D-20-00892.pdf Apparently done by Nathan Grubagh here at Yale.

https://www.nytimes.com/2020/05/07/us/new-york-city-coronavirus-outbreak.html

Optimization by Simulated Annealing | Science

May 16, 2020

https://science.sciencemag.org/content/220/4598/671

Travel From New York City Seeded Wave of U.S. Outbreaks

May 16, 2020

https://www.nytimes.com/2020/05/07/us/new-york-city-coronavirus-outbreak.html

Travel From New York City Seeded Wave of U.S. Outbreaks

May 10, 2020

Here’s the paper in Cell
https://www.cell.com/pb-assets/products/coronavirus/CELL_CELL-D-20-00892.pdf Apparently done by Nathan Grubagh here at Yale.

https://www.nytimes.com/2020/05/07/us/new-york-city-coronavirus-outbreak.html

Locally noisy autonomous agents improve global human coordination in network experiments | Nature

May 4, 2020

https://www.nature.com/articles/nature22332

Letter | Published: 17 May 2017

Locally noisy autonomous agents improve global human coordination in network experiments

Hirokazu Shirado & Nicholas A. Christakis

Nature volume 545, pages370–374 (18 May 2017)

Detecting sample swaps in diverse NGS data types using linkage disequilibrium | bioRxiv

April 29, 2020

https://www.biorxiv.org/content/10.1101/2020.03.15.992750v2

https://twitter.com/michaelhoffman/status/1255222686646747136 swap paper