Archive for the 'SciLit' Category
Crack down on genomic surveillance
March 4, 2020Distinct microbial and immune niches of the human colon
February 23, 2020connects microbiome & immune cells
https://www.nature.com/articles/s41590-020-0602-z.epdf
Kylie R. James, Tomas Gomes, Rasa Elmentaite, …Sarah A. Teichmann
iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone | bioRxiv
February 16, 2020iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone | bioRxiv https://www.biorxiv.org/content/10.1101/2020.02.11.944132v1
Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function
February 8, 2020Paper of interest
February 1, 2020https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6516-1
The effects of common structural variants on 3D chromatin structure
Omar Shanta, Amina Noor, Human Genome Structural Variation Consortium (HGSVC) & Jonathan Sebat
BMC Genomics volume 21, Article number: 95 (2020)
Tobacco smoking and somatic mutations in human bronchial epithelium
February 1, 2020https://www.nature.com/articles/s41586-020-1961-1
Tobacco smoking and somatic mutations in human bronchial epithelium
Kenichi Yoshida, Kate H. C. Gowers, Henry Lee-Six, Deepak P. Chandrasekharan, Tim Coorens, Elizabeth F. Maughan, Kathryn Beal, Andrew Menzies, Fraser R. Millar, Elizabeth Anderson, Sarah E. Clarke, Adam Pennycuick, Ricky M. Thakrar, Colin R. Butler, Nobuyuki Kakiuchi, Tomonori Hirano, Robert E. Hynds, Michael R. Stratton, Iñigo Martincorena, Sam M. Janes & Peter J. Campbell
Human placenta has no microbiome but can contain potential pathogens | Nature
January 26, 2020require 2 sources of evidence for each microbe & find none!
Kinship structure inference
January 25, 2020Ancient genome-wide analyses infer kinship structure in an Early Medieval Alemannic graveyard
http://advances.sciencemag.org/content/4/9/eaao1262
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