Mind control as a guide for the mind | Nature Human Behaviour
Archive for the 'SciLit' Category
Mind control as a guide for the mind | Nature Human Behaviour
August 18, 2018Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data: Biophysical Journal
August 18, 2018Modeling RNA Secondary Structure with Sequence Comparison &
Experimental Mapping Data
https://www.Cell.com/biophysj/fulltext/S0006-3495(17)30689-6 combines TurboFold sec. structure prediction w/ results of SHAPE assays
Zhen Tan
Gaurav Sharma
David H. Mathews
Open Archive Published:July 20, 2017
DOI:https://doi.org/10.1016/j.bpj.2017.06.039
Addressing the minimum fleet problem in on-demand urban mobility | Nature
August 17, 2018Addressing the minimum fleet problem in on-demand urban mobility by @mmvazifeh, @stevenstrogatz et al.
https://www.Nature.com/articles/s41586-018-0095-1 Solved by putting taxis & their riders into a large #network
Muons: the little-known particles helping to probe the impenetrable
August 17, 2018Muons: the little-known particles helping to probe the impenetrable, via @NaturePodcast https://www.Nature.com/articles/d41586-018-05254-2 Using “muography” to see into the ground, beneath volcanos & into pyramids
New study finds cell line difference across labs
August 16, 2018https://www.nature.com/articles/s41586-018-0409-3
QT:{{”
“… comprehensive genomic characterization of 27 strains of the common breast cancer cell line MCF7 uncovered rapid genetic
diversification. Similar results were obtained with multiple strains of 13 additional cell lines.
“}}
genome-wide starr-seq + sources of experimental bias
August 12, 2018quite relevant
https://www.nature.com/articles/nmeth.4534
Resolving systematic errors in widely used enhancer activity assays in human cells
Felix Muerdter
, Łukasz M Boryń
, Ashley R Woodfin
, Christoph Neumayr
, Martina Rath
, Muhammad A Zabidi
, Michaela Pagani
, Vanja Haberle
, Tomáš Kazmar
, Rui R Catarino
, Katharina Schernhuber
, Cosmas D Arnold
& Alexander Stark
Nature Methods volume 15, pages141–149 (2018)
text mining and privacy
August 4, 2018Don’t quote me: reverse identification of research participants in social media studies
John W. Ayers,
Theodore L. Caputi,
Camille Nebeker &
Mark Dredze
npj Digital Medicine
volume 1, Article number: 30 (2018)
Induced Structural Disorder as a Molecular Mechanism for Enzyme Dysfunction in Phosphoglucomutase 1 Deficiency – ScienceDirect
July 28, 2018Induced Structural Disorder as a Molecular Mechanism for Enzyme Dysfunction in Phosphoglucomutase 1 Deficiency – ScienceDirect https://www.sciencedirect.com/science/article/pii/S0022283616001625
GA4GH’s paper on data sharing
July 27, 2018Perspective | OPEN | Published: 23 July 2018
Responsible sharing of biomedical data and biospecimens via the “Automatable Discovery and Access Matrix” (ADA-M)
J. Patrick Woolley,
Emily Kirby,
Josh Leslie,
Francis Jeanson,
Moran N. Cabili,
Gregory Rushton,
James G. Hazard,
Vagelis Ladas,
Colin D. Veal,
Spencer J. Gibson,
Anne-Marie Tassé,
Stephanie O. M. Dyke,
Clara Gaff,
Adrian Thorogood,
Bartha Maria Knoppers,
John Wilbanks &
Anthony J. Brookes
npj Genomic Medicinevolume 3, Article number: 17 (2018) | Download Citation
new paper in Nature Genomic Medicine:
https://www.nature.com/articles/s41525-018-0057-4
Journal Club by JG
July 27, 2018TWAS of 229k women identifies new candidate susceptibility genes for breast cancer https://www.Nature.com/articles/s41588-018-0132-x Metascan approach. Derive model for imputing transcriptome from #GTEx & validate against TCGA. Application to BCAC.
linkstream2 microblog 