Posts Tagged ‘cbb752’

The role of regulatory variation in complex traits and disease : Nature Reviews Genetics : Nature Publishing Group

June 12, 2016

Reg. variation in cplx traits by @LeonidKruglyak
http://www.nature.com/nrg/journal/v16/n4/full/nrg3891.html nice teaching figure for #eQTLs, showing how mostly cis + hotspots http://www.nature.com/nrg/journal/v16/n4/full/nrg3891.html

Plant endophytes as a platform for discovery-based undergraduate science education : Abstract : Nature Chemical Biology

March 26, 2016

Ex. of extreme project oriented course

http://www.nature.com/nchembio/journal/v3/n7/abs/nchembio0707-356.html

EM algorithm

March 11, 2016

What’s the EM #algorithm?
http://www.nature.com/nbt/journal/v26/n8/full/nbt1406.html Description of its essence in simple contexts (ie coin toss) & as soft version of kmeans

What is the expectation maximization algorithm? : Article : Nature Biotechnology

Primer
Nature Biotechnology 26, 897 – 899 (2008)
doi:10.1038/nbt1406

Chuong B Do & Serafim Batzoglou

Abstract
The expectation maximization algorithm arises in many computational biology applications that involve probabilistic models. What is it good for, and how does it work?

without too much math

SVM movie

March 5, 2016

quick video for visualizing the power of kernels in SVM
https://www.youtube.com/watch?v=3liCbRZPrZA

Visualizing matrix multiplication as a linear combination – Eli Bendersky’s website

February 20, 2016

http://eli.thegreenplace.net/2015/visualizing-matrix-multiplication-as-a-linear-combination/

MIT Linear Algebra, Lecture 3: Matrix Multiplication and Inverse Matrices – good coders code, great coders reuse

February 20, 2016

http://www.catonmat.net/blog/mit-linear-algebra-part-three/

An Introduction to Statistical Learning: with Applications in R – Gareth James, Daniela Witten, Trevor Hastie, Robert Tibshirani – Google Books

February 13, 2016

https://books.google.com/books?id=qcI_AAAAQBAJ&printsec=frontcover&dq=An+Introduction+to+Statistical+Learning:+with+Applications+in+R+type:pdf&hl=en&sa=X&ved=0ahUKEwjy9uaMjfXKAhUKSiYKHStsA0YQ6AEIKzAA#v=onepage&q&f=false

https://books.google.com/books?id=qcI_AAAAQBAJ&printsec=frontcover&dq=An+Introduction+to+Statistical+Learning:+with+Applications+in+R+type:pdf&hl=en&sa=X&ved=0ahUKEwjy9uaMjfXKAhUKSiYKHStsA0YQ6AEIKzAA#v=onepage&q&f=false

Commonly Taught Bioinformatics Topics, Derived from Syllabi of 19 Universities.

September 24, 2015

A Helpful Reference

https://apps.lis.illinois.edu/wiki/download/attachments/4369699/curriculum+analysis.doc?version=4

Introduction to Systems Modeling in Biology MCDB 261 S15

September 19, 2015

http://mcdb261s15.commons.yale.edu/

Rebooting MOOC Research

May 15, 2015

Rebooting #MOOC Research https://www.sciencemag.org/content/347/6217/34.summary
Perspective from an #education institution: How to measure engagement of the student?