Posts Tagged ‘dc’

Legos, text blocks, TFs+motifs, & animations

March 7, 2021

Slicker and newer release of “powers of 10” type of video [zooms into flower instead of a person though]:
https://www.youtube.com/watch?v=yvpPHoHh420

The first ~half of this video may be useful:
https://www.youtube.com/watch?v=D2cfP49KOno

Doesn’t include person/organ level, but still a nice demonstration — Structure of a chromosome and zoom in to DNA:
https://www.youtube.com/watch?v=57Q5V0HcIWU

May be useful in the context of basic brain biol:
https://www.youtube.com/watch?v=Zj3RxtJ_Ljc

Legos, text blocks, TFs+motifs, & animations

February 14, 2021

DNA replication (addition of a single nucleotide): https://gifer.com/en/E43I

Dna Replication: https://www.pinterest.com/pin/372461831679047587/

Another for DNA replication: https://www.kozanbilgi.net/dna-yapisi.html

multigif of lac repressor binding to DNA:
https://proteopedia.org/wiki/index.php/Lac_repressor

gif of double-helix: https://gifer.com/en/Oun6

multigif of Lysine 18 sits in the major groove of DNA, recognizing the DNA sequence CGG:
https://www.umass.edu/molvis/workshop/imgs/polyview.htm

SK found this during our call — How to make your own DNA model using LEGO: https://www.youtube.com/watch?app=desktop&v=XV-k00iQk2w

50-second video on organization of the genome & base pairing (by NHGRI): https://www.youtube.com/watch?v=egVws2sZdd0

6-minute video on the structure of DNA:
https://www.youtube.com/watch?v=o_-6JXLYS-k

Misc sources:
https://www.uniprot.org/

http://jaspar.genereg.net/search?page=2&q=&tax_group=vertebrates&collection=CORE&page_size=250

https://www.genome.gov/genetics-glossary/Thymine

covid-19 vaccine?

April 28, 2020

In Race for a Coronavirus Vaccine, an Oxford Group Leaps Ahead
https://www.nytimes.com/2020/04/27/world/europe/coronavirus-vaccine-update-oxford.html

Compelling argument against Slack

May 27, 2019

Stop Letting Modern Distractions Steal Your Attention

Making yourself inaccessible from time to time is essential to boosting your focus.

https://www.nytimes.com/2019/03/26/smarter-living/stop-letting-modern-distractions-steal-your-attention.html

QT:{{”
This kind of task switching comes with a cost. It’s called attention residue, a term established by Sophie Leroy, a professor at the Bothell School of Business at the University of Washington. In a 2009 study, Dr. Leroy found that if people transition their attention away from an unfinished task, their subsequent task performance will suffer. For example, if you interrupt writing an email to reply to a text message, it will take time to refocus when you turn your attention back to finishing your email. That little bit of time of adjusting your focus — the residue — compounds throughout the day. As we fragment our attention, fatigue and stress increases, which negatively affects performance.

At the very least, she said, start leaving your phone behind during certain periods of the day, and perhaps establishing no-phone zones in your house or workplace. Treat it as an experiment: Try things and see what makes you feel good, she said.
“}}

‘Go or grow’: the key to the emergence of invasion in tumour progression?

November 16, 2018

https://www.ncbi.nlm.nih.gov/pubmed/20610469

A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies

January 6, 2018

A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in #eQTL Studies http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000770 Early discussion & development of PEER factors

Network propagation: a universal amplifier of genetic associations : Nature Reviews Genetics : Nature Research

September 11, 2017

#Network propagation [by Markov walks, heat flow, diffusion, &c]: a universal amplifier of genetic associations
http://www.Nature.com/nrg/journal/v18/n9/abs/nrg.2017.38.html

Lenore Cowen,
Trey Ideker,
Benjamin J. Raphael
& Roded Sharan

http://www.nature.com/nrg/journal/v18/n9/abs/nrg.2017.38.html?foxtrotcallback=true

Frustration in biomolecules | Quarterly Reviews of Biophysics | Cambridge Core

November 1, 2016

#Frustration in biomolecules
https://www.cambridge.org/core/journals/quarterly-reviews-of-biophysics/article/frustration-in-biomolecules/DECEA176849986FC11DB079C1EB4B24A Reviews the field: how large molecules pay a local price to achieve global stability

Harnessing the Immune System to Fight Cancer

August 15, 2016

Harnessing the Immune System to Fight #Cancer
http://www.nytimes.com/2016/07/31/health/harnessing-the-immune-system-to-fight-cancer.html Highlights @BMSnews checkpoint inhibitors Yervoy & Opdivo

How does multiple testing correction work?

June 13, 2016

How does multiple-testing correction work
http://www.nature.com/nbt/journal/v27/n12/abs/nbt1209-1135.html Intuition for teaching: genome-wide error rate on a single gene v family