Posts Tagged ‘from’

BoxPlotR: a web tool for generation of box plots

September 21, 2014

They published a paper on a web tool to generate box plots !! http://www.nature.com/nmeth/journal/v11/n2/full/nmeth.2811.html QT:{{”
Despite the obvious advantages of the box plot for simultaneous representation of data set and statistical parameters, this method is not in common use, in part because few available software tools allow the facile generation of box plots. For example, the standard spreadsheet tool Excel is unable to generate box plots.

M.S. and J.W. conceived of the box plot tool
“}}

Related:
http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioinformatics.btu038.abstract

Realizing the promise of cancer predisposition genes : Nature : Nature Publishing Group

September 19, 2014

http://www.nature.com/nature/journal/v505/n7483/full/nature12981.html?WT.ec_id=NATURE-20140116

23andme research portal

September 19, 2014

https://www.23andme.com/researchportal

By The Numbers: Search NIH Grant Data By Institution

September 19, 2014

http://www.npr.org/blogs/health/2014/09/09/342196432/by-the-numbers-search-nih-grant-data-by-institution

IHEC data matrix

September 18, 2014

http://epigenomesportal.ca/ihec/grid.html

AliveCor

September 15, 2014

http://www.alivecor.com/home

Regexr

September 6, 2014

Nice website for learning/testing regular expressions:

http://www.regexr.com/

how to get full path of a unix file

September 6, 2014

ON MAC:

1. Drag the file from finder to a terminal. Yes, pull it out with some effort and just drop it right there…

2. The full path will magically show up in no time!

ON LINUX

http://stackoverflow.com/questions/5265702/how-to-get-full-path-of-a-file According to Stackoverflow, you should do:

readlink -f file.txt

ON BOTH:

find $PWD -iname “*” -maxdepth 1

find $PWD -maxdepth 1

Constructing structural networks of signaling pathways on the proteome scale

September 6, 2014

Structural networks of signaling pathways
http://www.sciencedirect.com/science/article/pii/S0959440X1200070X Prism on IL10 #networks, mapping on Cosmic, disrupting mutations as drivers

markov logic network from KDD 2014, might be good for netessay

August 31, 2014

[[DW: very large-scale models (vs. VLSI): markov logic network on customer networks, Innovation Award Talk by Pedro Domingos, KDD 2014 ]]

http://homes.cs.washington.edu/~pedrod/803

also, it has biological applications like:
Markov Logic Networks in the Analysis of Genetic Data
https://www.systemsbiology.org/markov-logic-networks-analysis-genetic-data