Looks useful!
http://nar.oxfordjournals.org/content/early/2013/11/24/nar.gkt1188
Posts Tagged ‘funseq’
1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans
December 1, 2013HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
November 27, 2013http://nar.oxfordjournals.org/content/40/D1/D930.long
HaploReg explores functional annotations, such as chromatin states in varied cell types, sequence conservation, regulatory motif
alterations and eQTLs, of linked SNPs or indels within LD block of queried SNPs. The output provides a the guide to develop hypotheses of functional impact of non-coding variants, especially GWAS SNPs. HaploReg is currently limited to known variants (e.g. 1000 Genome variants and dbSNPs) and is unable to deal with private variants.
cancer DNA study
November 19, 2013GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations
September 1, 2013no website, github + readthedocs distribution
http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003153
linkstream2 microblog 