http://www.nytimes.com/2013/04/22/health/patients-genes-seen-as-future-of-cancer-care.html
Posts Tagged ‘#genomics’
Patients’ Genes Seen as Future of Cancer Care – NYTimes.com
April 23, 2013Relating CNVs to transcriptome data at fine resolution: Assessment of the effect of variant size, type, and overlap with functional regions
April 19, 2013http://genome.cshlp.org/content/21/12/2004.long
initial cnv eqtls
From pseudogenes to proteins
April 19, 2013Gencode perspective on massspec of pseudogenes
http://www.nature.com/nmeth/journal/v8/n6/full/nmeth0611-448b.html
Identifiability Think Tank Report Published in Genetics in Medicine
April 12, 2013an article describing the Think Tank was just published online in Genetics in Medicine:
http://www.nature.com/doifinder/10.1038/gim.2013.40
Somatic evolutionary genomics: Mutations during development cause highly variable genetic mosaicism with risk of cancer and neurodegeneration
April 9, 2013Paper giving a conceptual framework to somatic mosaicism
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array
March 31, 2013Retrotransposition of gene transcripts leads to structural variation in mammalian genomes
March 17, 2013Adam D Ewing, Tracy J Ballinger, Dent Earl, Broad Institute Genome Sequencing and Analysis Program, Christopher C Harris, Li Ding, Richard K Wilson and David Haussler
Absolute quantification of somatic DNA alterations in human cancer
March 17, 2013Nat Biotechnol. 2012 May;30(5):413-21. doi: 10.1038/nbt.2203. Carter SL, Cibulskis K, Helman E, McKenna A, Shen H, Zack T, Laird PW, Onofrio RC, Winckler W, Weir BA, Beroukhim R, Pellman D, Levine DA, Lander ES, Meyerson M, Getz G.
Cell – Identifying Recent Adaptations in Large-Scale Genomic Data
March 9, 2013pos. sel. from 1000G phase 1
http://www.cell.com/retrieve/pii/S0092867413000871
Cell, Volume 152, Issue 4, 703-713, 14 February 2013
Copyright © 2013 Elsevier Inc. All rights reserved.
10.1016/j.cell.2013.01.035
Sharon R. Grossman,Kristian G. Andersen,Ilya Shlyakhter,Shervin Tabrizi,Sarah Winnicki,Angela Yen,Daniel J. Park,Dustin
Griesemer,Elinor K. Karlsson,Sunny H. Wong,Moran Cabili,Richard A. Adegbola,Rameshwar N.K. Bamezai,Adrian V.S. Hill,Fredrik O.
Vannberg,John L. Rinn,1000 Genomes Project,Eric S. Lander,Stephen F. Schaffner,Pardis C. Sabeti
RNA studies under fire
March 7, 2013High-profile results challenged over statistical analysis of sequence data http://www.nature.com/news/rna-studies-under-fire-1.10502
“In July 2010, a team led by Catherine Dulac and Christopher Gregg, both then at Harvard University in Cambridge, Massachusetts, published a study in Science estimating that 1,300 mouse genes — an order of magnitude more than previously known — were imprinted.
Now, researchers are arguing that a flawed analysis led Dulac and Gregg to vastly overestimate imprinting in their paper.”
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