Posts Tagged ‘i0flg’

Franz Josef Och – Wikipedia, the free encyclopedia

June 27, 2015

https://en.m.wikipedia.org/wiki/Franz_Josef_Och

Advertisements

June in transit: Summarizing a number of recent meetings including #genomicsfest & #icsg2015

June 27, 2015

Spent a lot of June going to meetings, incl.

PCAWG Santa Cruz
ICSG2015 (with a sub-visit to Tel Aviv)
Festival of Genomics
RNA-Seq 2015 Boston

“Crowd-sourced” notebook of favorite tweets:

https://storify.com/markgerstein/favorite-tweets-from-june-conferences-incl-festiva

My tagged posts, mostly links to papers:

https://linkstream2.gerstein.info/tag/i0flg/
https://linkstream2.gerstein.info/tag/i0isgc/
https://linkstream2.gerstein.info/tag/i0rnaseq15/
https://linkstream2.gerstein.info/tag/i0pcawgsc/

Lectures I gave:

http://lectures.gersteinlab.org/summary/Interpreting-Transcriptome-in-terms-of-Regulome–20150625-i0rnaseq15/

http://lectures.gersteinlab.org/summary/SVs_n_Pseudogenes_Tricky_but_Crucial_Genomic_Features–20150623-i0flg/

http://lectures.gersteinlab.org/summary/Comparing-Transcriptomes-of-Distant-Org–20150610-i0isgc-tau/

http://lectures.gersteinlab.org/summary/3D-struct-to-interpret-networks-deep-sequencing–i0isgc-20150608/

the rise of a digital immune system schatz – Google Search

June 27, 2015

A Digital Immune System by @mike_schatz
http://www.gigasciencejournal.com/content/1/1/4Next, microbes sensing environmental chemicals
(http://papers.gersteinlab.org/papers/metagenomics)?

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events : Nature Biotechnology : Nature Publishing Group

June 25, 2015

#Transcriptome analysis [focusing on brain tissue]
using…long-read[s]…reveals…co-association of
distant…exonshttp://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.3242.html

Mostly protein coding genes

Defining a personal, allele-specific, and single-molecule long-read transcriptome

June 25, 2015

http://www.pnas.org/content/111/27/9869.full

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing : Nature Biotechnology : Nature Publishing Group

June 25, 2015

http://www.nature.com/nbt/journal/v33/n6/abs/nbt.3238.html

Clan Genomics and the Complex Architecture of Human Disease: Cell

June 25, 2015

http://www.cell.com/cell/abstract/S0092-8674(11)01062-2?_returnURL=http%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867411010622%3Fshowall%3Dtrue

BMC Genomics | Full text | PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations

June 25, 2015

PacBio-LITS: a…targeted sequencing method for characterization of…disease-associated SVs
http://www.biomedcentral.com/1471-2164/16/214 Capture reagent+@PacBio

Sequencing and analysis of genomic fragments from the NF1 locus. – PubMed – NCBI

June 25, 2015

publication containing both F Collins & JC Venter!

http://www.ncbi.nlm.nih.gov/pubmed/?term=1338369

Genome evolution during progression to breast cancer

June 25, 2015

http://genome.cshlp.org/content/23/7/1097.long

Daniel E. Newburger1,6,
Dorna Kashef-Haghighi2,6,
Ziming Weng3,6,
Raheleh Salari2,
Robert T. Sweeney3,
Alayne L. Brunner3,
Shirley X. Zhu3,
Xiangqian Guo3,
Sushama Varma3,
Megan L. Troxell4,
Robert B. West3,7,
Serafim Batzoglou2,7 and
Arend Sidow3,5,7

Published in Advance April 8, 2013, doi:10.1101/gr.151670.112 Genome Res. 2013. 23:1097-1108