Posts Tagged ‘i0isgc’

June in transit: Summarizing a number of recent meetings including #genomicsfest & #icsg2015

June 27, 2015

Spent a lot of June going to meetings, incl.

PCAWG Santa Cruz
ICSG2015 (with a sub-visit to Tel Aviv)
Festival of Genomics
RNA-Seq 2015 Boston

“Crowd-sourced” notebook of favorite tweets:

https://storify.com/markgerstein/favorite-tweets-from-june-conferences-incl-festiva

My tagged posts, mostly links to papers:

https://linkstream2.gerstein.info/tag/i0flg/
https://linkstream2.gerstein.info/tag/i0isgc/
https://linkstream2.gerstein.info/tag/i0rnaseq15/
https://linkstream2.gerstein.info/tag/i0pcawgsc/

Lectures I gave:

http://lectures.gersteinlab.org/summary/Interpreting-Transcriptome-in-terms-of-Regulome–20150625-i0rnaseq15/

http://lectures.gersteinlab.org/summary/SVs_n_Pseudogenes_Tricky_but_Crucial_Genomic_Features–20150623-i0flg/

http://lectures.gersteinlab.org/summary/Comparing-Transcriptomes-of-Distant-Org–20150610-i0isgc-tau/

http://lectures.gersteinlab.org/summary/3D-struct-to-interpret-networks-deep-sequencing–i0isgc-20150608/

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Zikhron Ya’akov – Wikipedia, the free encyclopedia

June 18, 2015

https://en.m.wikipedia.org/wiki/Zikhron_Ya‘akov

goisrael.com/other/flashbooks/nl/Jerusalem – The Old City Accessible Tours/html/files/assets/downloads/pu blication.pdf

June 18, 2015

http://goisrael.com/other/flashbooks/nl/Jerusalem%20%E2%80%93%20The%20Old%20City%20Accessible%20Tours/html/files/assets/downloads/publication.pdf

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

June 16, 2015

Disorder in 3500 #proteomes from viruses and 3 domains of life http://www.tandfonline.com/doi/abs/10.1080/07391102.2012.675145 Larger human fraction of disordered residues (>40%)

Journal of Biomolecular Structure and Dynamics

Volume 30, Issue 2, 2012
DOI:10.1080/07391102.2012.675145B
Xue, A. Keith Dunker & Vladimir N. Uversky

pages 137-149

Church of the Holy Sepulchre – Jerusalem

June 14, 2015

http://www.sacred-destinations.com/israel/jerusalem-church-of-holy-sepulchre

A very brief history of Jerusalem – News – – Haaretz Daily Newspaper | Israel News

June 14, 2015

http://www.haaretz.com/news/.premium-1.592872

Ubble: the online test to predict if you’ll die within five years | Science | The Guardian

June 10, 2015

http://www.theguardian.com/science/2015/jun/04/ubble-online-test-die-five-years-lancet-uk-biobank

The structure, function and evolution of proteins that bind DNA and RNA : Nature Reviews Molecular Cell Biology : Nature Publishing Group

June 10, 2015

http://www.nature.com/nrm/journal/v15/n11/full/nrm3884.html

NATURE REVIEWS MOLECULAR CELL BIOLOGY | ANALYSIS
William H. Hudson
& Eric A. Ortlund
Nature Reviews Molecular Cell Biology 15, 749–760 (2014) doi:10.1038/nrm3884

Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

June 10, 2015

Func. Impact of Rare…Variation from Deep Sequencing…Exomes http://www.sciencemag.org/content/337/6090/64.abstract Relation to Protein Structural features (eg a-helices)

Science 6 July 2012:
Vol. 337 no. 6090 pp. 64-69
DOI: 10.1126/science.1219240

Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

Jacob A. Tennessen1,*,
Abigail W. Bigham2,*,†,
Timothy D. O’Connor1,*,
Wenqing Fu1,
Eimear E. Kenny3,
Simon Gravel3,
Sean McGee1,
Ron Do4,5,
Xiaoming Liu6,
Goo Jun7,
Hyun Min Kang7,
Daniel Jordan8,
Suzanne M. Leal9,
Stacey Gabriel4,
Mark J. Rieder1,
Goncalo Abecasis7,
David Altshuler4,
Deborah A. Nickerson1,
Eric Boerwinkle6,10,
Shamil Sunyaev4,8,
Carlos D. Bustamante3,
Michael J. Bamshad1,2,‡,
Joshua M. Akey1,‡,
Broad GO,
Seattle GO,
on behalf of the NHLBI Exome Sequencing Project

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters : Nature Biotechnology : Nature Publishing Group

June 10, 2015

Segal cites: Measurements of 1000s of…designed promoters
http://www.nature.com/nbt/journal/v30/n6/full/nbt.2205.html Num. binding sites correlated w/ expr., for 1st few #ICSG2015