https://www.nature.com/articles/nature24265
https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0352-z
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TCGA sex differences
https://www.cell.com/cancer-cell/abstract/S1535-6108(16)30111-8
Posts Tagged ‘mtg’
GTEx sex differential expression paper
September 5, 2018new CommonMind paper
December 22, 2016Gene expr. elucidates functional impact of…risk for SCZ
http://www.nature.com/neuro/journal/vaop/ncurrent/full/nn.4399.html CMC resource contains >2.1M #eQTLs involving ~1.6M SNPs
NATURE NEUROSCIENCE | ARTICLE
Gene expression elucidates functional impact of polygenic risk for schizophrenia
Menachem Fromer,
Panos Roussos,
Solveig K Sieberts,
Jessica S Johnson,
David H Kavanagh,
Thanneer M Perumal,
Douglas M Ruderfer,
….
Eric E Schadt,
Keisuke Hirai,
Kathryn Roeder,
Kristen J Brennand,
Nicholas Katsanis,
Enrico Domenici,
Bernie Devlin
& Pamela Sklar
Gamma frequency entrainment attenuates amyloid load and modifies microglia : Nature : Nature Research
December 19, 2016Gamma frequency entrainment attenuates amyloid load & modifies microglia http://www.nature.com/nature/journal/v540/n7632/full/nature20587.html Buying a 40 Hz light to fight Alzheimer’s!
PLOS Computational Biology: Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data
April 3, 2016Discovering TFBSs in…Repetitive Regions of #Genomes with Multi-Read
Analysis http://journals.PLOS.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002111 CSEM uses EM to refine site occupancy
Chung D, Kuan PF, Li B, SanalKumar R, Liang K, Bresnick E, Dewey C, and Keles S (2011), “Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data,” PLoS Computational Biology, 7(7): e1002111
http://www.stat.wisc.edu/~keles/Software/multi-reads/
CSEM
High-throughput DNA sequence data compression
August 9, 2015DNA sequence…#compression
http://bib.oxfordjournals.org/content/16/1/1.full Nice review comparing approaches on 2 axes: classic v Nextgen & reference-based v -free
Not much on LD-based approaches
Zexuan Zhu
Yongpeng Zhang
Zhen Ji
Shan He
Xiao Yang
Brief Bioinform (2015) 16 (1): 1-15.doi: 10.1093/bib/bbt087
First published online: December 3, 2013
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