Posts Tagged ‘mtg’

GTEx sex differential expression paper

September 5, 2018

TCGA sex differences

new CommonMind paper

December 22, 2016

Gene expr. elucidates functional impact of…risk for SCZ CMC resource contains >2.1M #eQTLs involving ~1.6M SNPs


Gene expression elucidates functional impact of polygenic risk for schizophrenia

Menachem Fromer,
Panos Roussos,
Solveig K Sieberts,
Jessica S Johnson,
David H Kavanagh,
Thanneer M Perumal,
Douglas M Ruderfer,
Eric E Schadt,
Keisuke Hirai,
Kathryn Roeder,
Kristen J Brennand,
Nicholas Katsanis,
Enrico Domenici,
Bernie Devlin
& Pamela Sklar

Gamma frequency entrainment attenuates amyloid load and modifies microglia : Nature : Nature Research

December 19, 2016

Gamma frequency entrainment attenuates amyloid load & modifies microglia Buying a 40 Hz light to fight Alzheimer’s!

PLOS Computational Biology: Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data

April 3, 2016

Discovering TFBSs in…Repetitive Regions of #Genomes with Multi-Read
Analysis CSEM uses EM to refine site occupancy

Chung D, Kuan PF, Li B, SanalKumar R, Liang K, Bresnick E, Dewey C, and Keles S (2011), “Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data,” PLoS Computational Biology, 7(7): e1002111


High-throughput DNA sequence data compression

August 9, 2015

DNA sequence…#compression Nice review comparing approaches on 2 axes: classic v Nextgen & reference-based v -free

Not much on LD-based approaches

Zexuan Zhu
Yongpeng Zhang
Zhen Ji
Shan He
Xiao Yang

Brief Bioinform (2015) 16 (1): 1-15.doi: 10.1093/bib/bbt087
First published online: December 3, 2013