Posts Tagged ‘quote’

Variation in human water turnover associated with environmental and lifestyle factors | Science

November 10, 2024

from podcast
QT:{{”

….Okay. So when you got measurements from this big group
of people, you end up
with kind of a range of water turnover and it varies by person and location. So how does this range
that you measured in this diverse group of people? How does it stack up with eight, eight ounce
glasses a day, which is like two liters of water a day, that recommendation we discussed?
Most people are not going to need to drink, eight
glasses of water a day, two liters of
water a day. If you measure how much water flows through your body, how much water comes in
and goes out every day, there’s a lot of variation, but it’s something like three to four liters a day
total. And that includes not just the water that you drink, but that includes the water that’s in the
food that you eat.
“}}

https://www.science.org/doi/10.1126/science.abm8668

The study of ancient DNA is helping to solve modern crimes

November 2, 2024

v. related to plight + deconvolution

https://www.economist.com/science-and-technology/2024/10/23/the-study-of-ancient-dna-is-helping-to-solve-modern-crimes

QT:{{”
Dr Willerslev had been able to obtain SNPs from Meng’s trousers. Then came the task of trying to identify whom they could have come from. In 2023 a man called Philip Patrick Westh was arrested in connection with a kidnapping case in the same area; because of similarities between the cases, the police believed that he had killed Meng too (Mr Westh denies most of the accusations related to the kidnapping case and pleaded not guilty to the charge of killing Meng). To assess the probability that the genetic material from Meng’s trousers had come from Mr Westh, Dr Willerslev made use of a DNA database of ordinary, healthy Danes. If the SNPs found on the trousers were identical to those in Mr Westh’s DNA, went the logic, and enough of them were sufficiently rare variants, the probability that they did indeed come from Mr Westh went up. Dr Willerslev testified that this particular pattern of SNP variants would be at least one million times more likely to turn up if the sample included DNA from Mr Westh, or a close relative, than if it did not.

But identifying a suspect from SNPs is another matter. Degraded samples can be extremely complex to analyse, says Dr Simonsen, in particular if material from several people has been mixed together. There are no standardised forensic protocols for separating out those signals, nor for how to confidently calculate the probability that the DNA belongs to a suspect. That matters because the stakes are somewhat higher in a criminal case than in the study of mammoths and dodos. But, says Dr Simonsen, “We expect that nut to be cracked.” He hopes to learn from Dr Willerslev’s team and develop new forensic tools. The work has already started: in September, researchers from Aalborg University and the University of Copenhagen, with whom he
collaborates, published a paper describing an approach for doing identification calculations based on SNPs.

He is not the only one to see potential. An American company called Astrea Forensics has recently spun out from the palaeogenomics group at the University of California in Santa Cruz, to offer aDNA expertise to law enforcement. Their speciality is the nuclear DNA found within hair, which has long been considered too fragmented and scarce to be of any use.
“}}

NYTimes.com: As 23andMe Struggles, Concerns Surface About Its Genetic Data

October 6, 2024

As 23andMe Struggles, Concerns Surface About Its Genetic Data

A plummet in the company’s valuation and a recent board resignation have raised questions about the future of genetic data collected from millions of customers.

https://www.nytimes.com/2024/10/05/business/23andme-dna-bankrupt.html?smid=em-share

QT:{{”
“People don’t, I think, appreciate how large the genetic information for a person is,” Mark Gerstein, a professor of biomedical informatics at Yale University, said on Saturday.
“In theory, if there’s a mess-up with your credit card or Social Security number, you get a new one, it can be fixed,” Professor Gerstein said. “But there’s absolutely no way to get a new genome.” …
Looking at a genome can reveal a complicated structure, akin to ones and zeros of binary code, Professor Gerstein said. That might make it seem like the information is harder to glean than from a personal tech device.
“Superficially, there might be a comforting aspect to that, as opposed to if I peek in your email box,” he said. However complex the genome is, though, it can still hold sensitive private data.
“In the longer term, maybe it actually is more revealing,” he said. “}}

Your DNA Can Now Be Pulled From Thin Air. Privacy Experts Are Worried. – The New York Times

September 28, 2024

quite relevant to plight & deconvolution

QT:{{”

Over the last decade, wildlife researchers have refined techniques for recovering environmental DNA, or eDNA — trace amounts of genetic material that all living things leave behind….The eDNA technology is also used in wastewater surveillance systems to monitor Covid and other pathogens.

But all along, scientists using eDNA were quietly recovering gobs and gobs of human DNA. To them, it’s pollution, a sort of human genomic bycatch muddying their data. But what if someone set out to collect human eDNA on purpose?

New DNA collecting techniques are “like catnip” for law enforcement officials, says Erin Murphy, a law professor at the New York University School of Law who specializes in the use of new
technologies in the criminal legal system. The police have been quick to embrace unproven tools, like using DNA to create probability-based sketches of a suspect.

As a proof of concept in one of their experiments, the researchers scooped up a soda-can-size sample of water from a creek in St. Augustine, Fla. They then fed the genetic material from the sample through a nanopore sequencer, which allows researchers to read longer stretches of DNA. The one they used cost about $1000, is the size of a cigarette lighter and plugs into a laptop like a flash drive.

From the samples, the team recovered much more legible human DNA than they had anticipated. And as knowledge expands about human genetics, analysis of even limited samples can reveal a wealth of information. …

That highlights the possibility that law enforcement officials could use eDNA collected at crime scenes to incriminate people, even though wildlife ecologists who developed the techniques say the science isn’t mature enough for such purposes. Scientists have yet to pin down the fundamentals of eDNA, like how it travels through air or water or how it degrades over time. And nanopore sequencing — the technology that allowed Dr. Duffy’s team to find longer and more informative DNA fragments — still has a much higher error rate than older
technologies, meaning an unusual genetic signature that seems like a promising lead could be a red herring.
….

“There’s an imbalance in almost all systems of the world between what law enforcement is allowed to do, versus publicly funded research, versus private companies,” said Barbara Prainsack, a professor at the University of Vienna who studies the regulation of DNA technology in medicine and forensics.
“}}

https://www.nytimes.com/2023/05/15/science/environmental-dna-ethics-privacy.html

How to Get Better Rest, According to a Sleep Expert – The New York Times

September 20, 2024

https://www.nytimes.com/2022/11/01/well/better-sleep-tips.html
QT:{{”

Declutter your bedroom
Your computer, a heap of laundry, the pile of sticky notes reminding you of all of your unfinished tasks — clear those all out of the room where you sleep.
….

To further set yourself up for sleep, get blackout curtains to block out light, or invest in a comfortable sleep mask. And consider turning down the heat — or turning up the air conditioning — so that your sleeping area is between 60 and 68 degrees at night. You want your room to be dark and cool,
….
You can’t expect your brain to instantly power down the way a laptop does when you close the lid, Dr. Prather said. Instead, you should plan a transition period that lets your brain wind down.
….
Rewatch your favorite show.
Many clinicians caution against screen time before bed, but Dr. Prather said he pays more attention to the content of what people consume as they settle down for the night, rather than whether they’re looking at a laptop, a paperback or their phone. A thriller — whether it’s a novel or a movie — can prompt you to stay awake a bit longer or to mull over the answer to a mystery as you’re trying to fall asleep. Instead, he recommended watching something calming, and ideally, a show you’ve seen before. Dr. Prather turns to “The Office,” which he said he’s rewatched more times than he can count, because he already knows what happens next.
….
In general, if you are struggling to fall or stay asleep you should get out of bed, Dr. Prather said. Give yourself 20 minutes or so to try to sleep, but if you’re still wired, head to the couch or living room and do something quiet, Dr. Prather advised, like knitting or meditating. You only want to associate the position you sleep in with actually falling asleep; if your body gets used to staying awake, and struggling to sleep, in that position, you’ll have a harder time conditioning yourself to sleep through the night.
“}}

Roger Fisher’s Brilliant Solution | Laura Grace Weldon

August 31, 2024

https://lauragraceweldon.com/2024/05/18/roger-fishers-brilliant-solution/#:~:text=The%20volunteer%20would%20carry%20with,to%20kill%20one%20human%20being.

QT:{{”

Then he took on the utter idiocy of nuclear weapons. Writing March’s 1981 issue of The Bulletin of the Atomic Scientists (the entire article is a worthy read) Fisher pointed out that there are no military solutions to the world’s largest problems. “The only means we have available,” Fisher wrote, “is to try to change someone’s mind.” Like any good negotiator, he explains why negotiation must include each side’s interests with full participation in joint
problem-solving. And, further, to understand and to care about one another as the only way to lasting peace. His essay includes specific recommendations but my favorite and the most controversial is the following.

There is a person who is required to accompany the president with an attaché case containing the codes needed to authorize firing nuclear weapons. Fisher imagines this person as a young man, perhaps a naval officer named George, who is around the president every day. That person-to-person familiarity is the heart of Fisher’s nuclear deterrence. Because in his proposal, the nuclear codes are not in the case. Here’s how Fisher explains it.

My suggestion was quite simple: Put that needed code number in a little capsule, and then implant that capsule right next to the heart of a volunteer. The volunteer would carry with him a big, heavy butcher knife as he accompanied the President. If ever the President wanted to fire nuclear weapons, the only way he could do so would be for him first, with his own hands, to kill one human being. The President says, ‘George, I’m sorry but tens of millions must die.’ He has to look at someone and realize what death is — what an innocent death is. Blood on the White House carpet. It’s reality brought home.

When I suggested this to friends in the Pentagon they said, “My God, that’s terrible. Having to kill someone would distort the President’s judgment. He might never push the button.”
“}}

Researchers are figuring out how large language models work

August 11, 2024

https://www.economist.com/science-and-technology/2024/07/11/researchers-are-figuring-out-how-large-language-models-work
QT:{{”
A sparse autoencoder is, essentially, a second, smaller neural network that is trained on the activity of an LLM, looking for distinct patterns in activity when “sparse” (ie, very small) groups of its neurons fire together. Once many such patterns, known as features, have been identified, the researchers can determine which words trigger which features. The Anthropic team found individual features that corresponded to specific cities, people, animals and chemical elements, as well as higher-level concepts such as transport infrastructure, famous female tennis players, or the notion of secrecy. They performed this exercise three times, identifying 1m, 4m and, on the last go, 34m features within the Sonnet LLM.
“}}

How to tax billionaires—and how not to

August 11, 2024

https://www.economist.com/leaders/2024/06/19/how-to-tax-billionaires-and-how-not-to
QT:{{”
One of these manoeuvres in America is to buy assets, offer these as collateral for loans and roll over the loans until their death. At that point any capital gains accrued over the owner’s lifetime are zeroed out and the clock starts anew for their heirs, who then themselves “buy, borrow and die”, as this (perfectly legal) device is known.
“}}

The Search for a New and Better Internet | The New Yorker

March 9, 2024

https://www.newyorker.com/magazine/2024/02/05/can-the-internet-be-governed
QT:{{”
Each now possesses a twelve-digit identity number, known as an Aadhaar (Hindi for “foundation”), which is linked to biometric information such as iris scans and fingerprints. But Nilekani’s real achievement has been to use the I.D. numbers as the underpinnings of an integrated digital ecology (“the stack”). It consists of government-enabled modules (collectively referred to as digital public infrastructure, or D.P.I.) that allow citizens to make online payments, receive welfare, conduct banking, and store and certify official documents (e.g., covid-vaccine certificates).
“}}

Last but not least – ScienceDirect

February 10, 2024

https://www.sciencedirect.com/science/article/abs/pii/S0262407919313351
QT:{{”
On the other hand, later-borns are at increased risk of schizophrenia because viral infections associated with the condition are frequently introduced into families by young, snotty toddlers. So a pregnant woman who has young children around is at higher risk of these infections and their adverse effect on her fetus.
“}}
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