Posts Tagged ‘singlecell’
ScEQTL
May 12, 2022https://www.nature.com/articles/s41586-022-04713-1
Published: 11 May 2022
Single-cell eQTL models reveal dynamic T cell state dependence of disease loci Aparna Nathan, Samira Asgari, Kazuyoshi Ishigaki, Cristian Valencia, Tiffany Amariuta, Yang Luo, Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Alkes L. Price, Leonid Lecca, Megan B. Murray, D. Branch Moody & Soumya Raychaudhuri
Nature (2022)
Statistical and machine learning methods for spatially resolved transcriptomics data analysis | Genome Biology | Full Text
April 29, 2022Identification of cell types from single cell data using stable clustering | Scientific Reports
March 27, 2022Anatomical structures, cell types and biomarkers of the Human Reference Atlas
November 10, 2021Anatomical structures, cell types and biomarkers of the Human Reference Atlas https://www.nature.com/articles/s41556-021-00788-6.pdf
host-viral infection maps from sc-rna seq with a computational framework
June 2, 2020Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients
https://www.sciencedirect.com/science/article/pii/S0092867420305687
Single cell estimation from bulk data
April 12, 2020Accurate estimation of cell composition in bulk expression through robust integration of single-cell information
Brandon Jew, Marcus Alvarez, Elior Rahmani, Zong Miao, Arthur Ko, Jae Hoon Sul, Kirsi H. Pietiläinen, Päivi Pajukanta, Eran Halperin doi:
Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq
November 2, 2019New cell type analysis in human cortex
October 26, 2019Published: 21 August 2019
Conserved cell types with divergent features in human versus mouse cortex
Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Brian Long, Nelson Johansen, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz P. Levi, Soraya I. Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard G. Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder P. Gwinn, Daniel Hirschstein, C. Dirk Keene, Mohamed Keshk, Andrew L. Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey G. Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya V. Shapovalova, Saroja
Somasundaram, Aaron Szafer, Elliot R. Thomsen, Michael Tieu, Gerald Quon, Richard H. Scheuermann, Rafael Yuste, Susan M. Sunkin, Boudewijn Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John W. Phillips, Bosiljka Tasic, Hongkui Zeng, Allan R. Jones, Christof Koch & Ed S. Lein
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