Posts Tagged ‘tcga’

Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types : Nature Genetics : Nature Publishing Group

January 8, 2015

Analysis of noncoding somatic mutations &…expression alterations 505 WGS variants w. RNAseq, #TCGA as of Mar ’14

all of what’s in TCGA as of spring ’14

505 TCGA WGS Somatic mutations, Expression Calls, CNA

Orthogonal to PCAWG-607 (Alexandrov et al + 100 "public" stomach cancers)

BMC Bioinformatics | Full text | Comparing somatic mutation-callers: beyond Venn diagrams

August 19, 2014

Comparing #somatic mutation-callers: beyond Venn
diagrams Moving from poor overlap of existing methods to metacallers

Meta caller developed based on multiple mutation callers calibrated by validation

Pseudogene expression in TCGA data

July 11, 2014

The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes

Leng Han
Yuan Yuan
Siyuan Zheng
Yang Yang
Jun Li
Mary E. Edgerton
Lixia Diao
Yanxun Xu
Roeland G. W. Verhaak
Han Liang

2012 Release: Study shows colon and rectal tumors constitute a single type of cancer

July 20, 2012