Posts Tagged ‘to’

Human hippocampal neurogenesis in adulthood, ageing and Alzheimer’s disease

March 1, 2026

Interesting paper on the Aging Brain. Featured in NY Times.

Nature https://www.nature.com/articles/s41586-026-10169-4

Disouky, A., Sanborn, M. A., Sabitha, K. R., Mostafa, M. M., Ayala, I. A., Bennett, D. A., Lu, Y., Zhou, Y., Keene, C. D., Weintraub, S., Gefen, T., Mesulam, M., Geula, C., Maienschein-Cline, M., Rehman, J., & Lazarov, O. (2026). Human hippocampal neurogenesis in adulthood, ageing and Alzheimer’s disease. Nature.
https://doi.org/10.1038/s41586-026-10169-4

LDA resources

February 28, 2026

Ganegedara, T. (2025, February 2). Intuitive Guide to Latent Dirichlet Allocation. Towards Data Science.
https://towardsdatascience.com/light-on-math-machine-learning-intuitive-guide-to-latent-dirichlet-allocation-437c81220158/

some blogs
https://johaupt.github.io/blog/Topic_modeling_with_Gibbs_sampling_in_R.html https://agustinus.kristia.de/blog/lda-gibbs/

Concepts, estimation and interpretation of SNP-based heritability – Nature Genetics

February 22, 2026

See Box 1, viz:

QT:{{”

Box 1 Statistical model used in the GREML approach to estimate hS2NP The statistical model used by GREML can be described in its simplest form as y = Wu + e
where y is an n x 1 vector of standardized phenotypes with n equal to the sample size, W = {wij} is an n x m standardized SNP genotype matrix where m is the number of SNPs, u = {ui} is an m x 1 vector of the additive effects of all variants when fitted jointly in the model, u ~ N(0,Iσ2) with I being an identity matrix, u and e is a vector of residuals, e ~ N(0,Iσ2). An equivalent model is….

y=g+e
g ~ N(0,A…)
A=W W’

In practice, A is called the SNP-derived genetic (or genomic) relationship matrix (GRM) and is estimated from the SNP data. The estimate …from GREML can be described as the estimated variance explained by all the SNPs (mσu) or equivalently as the estimated genetic variance by contrasting the phenotypic similarity
between unrelated individuals to their SNP-derived genetic similarity “}}

https://www.nature.com/articles/ng.3941

Yang, J., Zeng, J., Goddard, M. E., Wray, N. R., & Visscher, P. M. (2017). Concepts, estimation and interpretation of SNP-based heritability. Nature Genetics, 49(9), 1304–1310.
https://doi.org/10.1038/ng.3941

Transforming Life Sciences with Data, Technology & Human Science | IQVIA

February 15, 2026

https://www.iqvia.com/

interesting?

People Are Getting Worried About Household Mold. Should You Be?

February 14, 2026

QT:{{”
According to Google Trend data, searches for “household mold” and related terms have grown in popularity over the last five years; examples include “mold toxicity symptoms,” up 170 percent, and “professional black mold removal,” up 250 percent.

You can buy a mold test kit at a store, but the Centers for Disease Control warns that a reliable sample is expensive, and there are no set standards for acceptable quantities of different types of mold in the home.

Dr. Nosanchuk acknowledged that molds can be dangerous, but also defended them. “They give us cheese, they give beer, they give L.S.D. — they do a lot of really cool things.”
“}}

Chevlen, D. (2026, January 29). People are getting worried about household mold. Should you be? The New York Times.
https://www.nytimes.com/2026/01/29/realestate/household-mold-search-traffic-trend.html

Exclusive: Have scientists found Leonardo da Vinci’s DNA? | Science | AAAS

February 4, 2026

I think you should definitely contact her for professional meeting (and then ask about Sophie possibly meeting with her and learning)

On Sun, Feb 1, 2026 at 5:40 PM Mark Gerstein <mark> wrote:

QT: {{"
The hunt for Leonardo’s DNA has been a high-profile proving ground for
“arteomics,” an emerging field that could transform how the art world
authenticates and protects its most precious objects (see sidebar,
below). Today, authorship decisions hinge on expert opinion on, for
example, how a brushstroke was made. “Connoisseurship is still what
counts,” says LDVP chair Jesse Ausubel, an environmental scientist at
Rockefeller University who previously led a major project to census
the diversity of marine life.

With human Y chromosome and other nuclear DNA sequences from both the
drawing and the letters in hand, the LDVP team approached Lee, a Y
chromosome expert, in late 2024. Lee was intrigued, and LDVP sent him
blinded sequence data from swabs of Holy Child, several Frosino
letters, and the cheeks of the scientists who sampled the materials.
….
Lee, Loftus, and Jackson geneticist Pille Hallast compared the
sequences with a panel of some 90,000 known markers—changes in
individual base pairs—that group Y chromosome sequences into lineages
called haplogroups. Four samples from Holy Child and the Frosino
letters could be reliably assigned a haplogroup—and they all converged
on E1b1b, a lineage found in the Tuscany area that Leonardo’s extended
family might have carried.
….
When Andrew Miranker peers at a Blakelock canvas, he sees more than
brushwork and varnish. He sees a molecular archive. “Paint is a
recording device,” says Miranker, a biophysicist at Yale University.
As oil paint slowly cures, it traps fragments of DNA—human, animal,
microbial—along with the dust and air of a studio. By interrogating
vanishingly small samples of the strata on supposed Blakelock
canvases, Miranker’s team hopes to uncover clues to whether they were
done by the artist himself or a clever forger.
….
For instance, minuscule paint flakes from an oil painting of a family
farmhouse by John Fairbanks, an American artist from the turn of the
20th century, yielded genetic signatures of farm animals, a dog, and
regional crops such as wheat and clover.

DNA often gets star billing, but proteins can also be telling, says
Julie Arslanoglu, an organic chemist at the Metropolitan Museum of Art
who co-founded Art Bio Matters, an international consortium decoding
molecular signatures in art.

She and University of Bordeaux analytical chemist Caroline Tokarski, a
pioneer in applying proteomic analysis to artworks, probed a
long-standing puzzle about 18th century English artist Thomas
Gainsborough. …. In 1773, Gainsborough wrote to a friend describing
a “secret recipe” for preventing smoke’s dimming effects: He dipped
drawings in skim milk.

To test that claim, the Met-Bordeaux team analyzed rubbings from
Gainsborough drawings in the Morgan Library & Museum. Their results,
published in Heritage Science in 2020, confirmed the legend: The
coating on Gainsborough’s sketches, including Hilly Landscape with
Cows on the Road, contained bovine milk proteins, especially casein.
But exactly how the artist applied the skim milk—and why it
helped—remains a riddle.

"}}

https://www.metmuseum.org/about-the-met/conservation-and-scientific-research/scientific-research/arche

https://www.science.org/content/article/have-scientists-found-leonardo-da-vinci-s-dna

Exclusive: Have scientists found Leonardo da Vinci’s DNA? | Science | AAAS

February 1, 2026

QT: {{”
The hunt for Leonardo’s DNA has been a high-profile proving ground for “arteomics,” an emerging field that could transform how the art world authenticates and protects its most precious objects (see sidebar, below). Today, authorship decisions hinge on expert opinion on, for example, how a brushstroke was made. “Connoisseurship is still what counts,” says LDVP chair Jesse Ausubel, an environmental scientist at Rockefeller University who previously led a major project to census the diversity of marine life.

With human Y chromosome and other nuclear DNA sequences from both the drawing and the letters in hand, the LDVP team approached Lee, a Y chromosome expert, in late 2024. Lee was intrigued, and LDVP sent him blinded sequence data from swabs of Holy Child, several Frosino letters, and the cheeks of the scientists who sampled the materials. ….
Lee, Loftus, and Jackson geneticist Pille Hallast compared the sequences with a panel of some 90,000 known markers—changes in individual base pairs—that group Y chromosome sequences into lineages called haplogroups. Four samples from Holy Child and the Frosino letters could be reliably assigned a haplogroup—and they all converged on E1b1b, a lineage found in the Tuscany area that Leonardo’s extended family might have carried.
….
When Andrew Miranker peers at a Blakelock canvas, he sees more than brushwork and varnish. He sees a molecular archive. “Paint is a recording device,” says Miranker, a biophysicist at Yale University. As oil paint slowly cures, it traps fragments of DNA—human, animal, microbial—along with the dust and air of a studio. By interrogating vanishingly small samples of the strata on supposed Blakelock canvases, Miranker’s team hopes to uncover clues to whether they were done by the artist himself or a clever forger.
….
For instance, minuscule paint flakes from an oil painting of a family farmhouse by John Fairbanks, an American artist from the turn of the 20th century, yielded genetic signatures of farm animals, a dog, and regional crops such as wheat and clover.

DNA often gets star billing, but proteins can also be telling, says Julie Arslanoglu, an organic chemist at the Metropolitan Museum of Art who co-founded Art Bio Matters, an international consortium decoding molecular signatures in art.

She and University of Bordeaux analytical chemist Caroline Tokarski, a pioneer in applying proteomic analysis to artworks, probed a long-standing puzzle about 18th century English artist Thomas Gainsborough. …. In 1773, Gainsborough wrote to a friend describing a “secret recipe” for preventing smoke’s dimming effects: He dipped drawings in skim milk.

To test that claim, the Met-Bordeaux team analyzed rubbings from Gainsborough drawings in the Morgan Library & Museum. Their results, published in Heritage Science in 2020, confirmed the legend: The coating on Gainsborough’s sketches, including Hilly Landscape with Cows on the Road, contained bovine milk proteins, especially casein. But exactly how the artist applied the skim milk—and why it
helped—remains a riddle.

“}}

https://www.metmuseum.org/about-the-met/conservation-and-scientific-research/scientific-research/arche

https://www.science.org/content/article/have-scientists-found-leonardo-da-vinci-s-dna

What Are ‘World Models’? The Key to the Next Big AI Leap – WSJ

January 2, 2026

What Are ‘World Models’? The Key to the Next Big AI Leap – WSJ https://www.wsj.com/tech/ai/world-models-ai-evolution-11275913
https://www.wsj.com/tech/ai/world-models-ai-evolution-11275913?mod=article_inline

Chris on X: “GPT-5.1 (Thinking High) is about 300 times cheaper per task than o3-preview (Low) while scorin g only a few points lower on ARC-AGI-1. 1 year later intelligence has gotten 300 times cheaper. This is why I can’t st and people who say “wahh the models too expensive” it will become https://t.co/VkfepKVTgV” / X

December 23, 2025

https://x.com/chatgpt21/status/1990516566073729362

Does a cell’s gene expression always reflect its function?

December 22, 2025

https://www.nature.com/articles/d41586-025-00088-1

Özel, M. N., & Desplan, C. (2025). Does a cell’s gene expression always reflect its function? Nature, 638(8052), 899–900.
https://doi.org/10.1038/d41586-025-00088-1