Posts Tagged ‘x57l’

Single Cell Analysis paper

June 30, 2017

http://genome-tech.ucsd.edu/public/Lake_Science_2016/
https://twitter.com/mikejg84/status/880240608144531456

16 Neuronal subtypes & [inter-regional] diversity revealed by [#singlecell]-nucleus RNAseq of…the brain
http://science.sciencemag.org/content/352/6293/1586.long

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.
Lake BB, Ai R, Kaeser GE, Salathia NS, Yung YC, Liu R, Wildberg A, Gao D, Fung HL, Chen S, Vijayaraghavan R, Wong J, Chen A, Sheng X, Kaper F, Shen R, Ronaghi M, Fan JB, Wang W, Chun J, Zhang K.
Science. 2016 Jun 24;352(6293):1586-90. doi: 10.1126/science.aaf1204.

First, design for data sharing : Nature Biotechnology : Nature Research

June 20, 2017

Design for data sharing
http://www.Nature.com/nbt/journal/v34/n4/full/nbt.3516.html Issues in distributing mPower mobile dataset – no DAC, allowing donors to change preferences

QT:{{”
“This March, Sage Bionetworks (Seattle) began sharing curated data collected from >9,000 participants of mPower, a smartphone-enabled health research study for Parkinson’s disease. The mPower study is notable as one of the first observational assessments of human health to rapidly achieve scale as a result of its design and execution purely through a smartphone interface. To support this unique study design, we developed a novel electronic informed consent process that includes participant-determined data-sharing preferences. It is through these preferences that the new data—including self-reported outcomes and quantitative sensor data—are shared broadly for secondary analysis. Our hope is that by sharing these data immediately, prior even to our own complete analysis, we will shorten the time to harnessing any utility that this study’s data may hold to improve the condition of patients who suffer from this disease.

Turbulent times for data sharing

Our release of mPower comes at a turbulent time in data sharing. The power of data for secondary research is top of mind for many these days. Vice President Joe Biden, in heading President Barack Obama’s ambitious cancer ‘moonshot’, describes data sharing as second only to funding to the success of the effort. However, this powerful support for data sharing stands in opposition to the opinions of many within the research establishment. To wit, the august New England Journal of Medicine (NEJM)’s recent editorial suggesting that those who wish to reuse clinical trial data without the direct participation and approval of the original study team are “research parasites”. In the wake of colliding perspectives on data sharing, we must not lose sight of the scientific and societal ends served by such efforts.” “}}

An Expanded View of Complex Traits: From Polygenic to Omnigenic: Cell

June 19, 2017

Thought-provoking calculations, perhaps suggesting that ever bigger association studies won’t yield useful results
https://twitter.com/joe_pickrell/status/875406448716632064

http://www.cell.com/cell/abstract/S0092-8674(17)30629-3

An Expanded View of Complex Traits: From Polygenic to Omnigenic

Evan A. Boyle
Yang I. Li
Jonathan K. Pritchard
DOI: http://dx.doi.org/10.1016/j.cell.2017.05.038

BeyondCorp – Enterprise Security | Google Cloud Platform

June 9, 2017

https://cloud.google.com/beyondcorp/

The structural repertoire of the human V kappa domain. – PubMed – NCBI

May 16, 2017

https://www.ncbi.nlm.nih.gov/pubmed/7556106

Standard conformations for the canonical structures of immunoglobulins. – PubMed – NCBI

May 16, 2017

https://www.ncbi.nlm.nih.gov/pubmed/9367782

Conformations of the third hypervariable region in the VH domain of immunoglobulins. – PubMed – NCBI

May 16, 2017

https://www.ncbi.nlm.nih.gov/pubmed/9466909

Same Stats, Different Graphs: Generating Datasets with Varied Appearance and Identical Statistics through Simulated Annealing (The Datasaurus Dozen) | Autodesk Research

May 15, 2017

https://www.autodeskresearch.com/publications/samestats

https://twitter.com/JustinMatejka/status/859075295059562498

great viz

Mirror neuron – Wikipedia

May 8, 2017

https://en.wikipedia.org/wiki/Mirror_neuron

Spindle neuron – Wikipedia

May 8, 2017

https://en.wikipedia.org/wiki/Spindle_neuron

QT:{{”

Spindle neurons, also called von Economo neurons (VENs), are a specific class of neurons that are characterized by a large
spindle-shaped soma (or body), gradually tapering into a single apical axon in one direction, with only a single dendrite facing opposite. Other neurons tend to have many dendrites, and the polar-shaped morphology of spindle neurons is unique. A neuron’s dendrites receive signals, and its axon sends them.

Spindle neurons are found in two very restricted regions in the brains of hominids—the family of species comprising humans and other great apes—the anterior cingulate cortex (ACC) and the fronto-insular cortex (FI). Recently they have been discovered in the dorsolateral prefrontal cortex of humans.[1] Spindle cells are also found in the brains of the humpback whales, fin whales, killer whales, sperm whales,[2][3] bottlenose dolphin, Risso’s dolphin, beluga whales,[4] African and Asian elephants,[5] and to a lesser extent in macaque monkeys[6] and raccoons.[7] The appearance of spindle neurons in distantly related clades suggests that they represent convergent evolution, specifically an adaptation to larger brains.
“}}