Posts Tagged ‘x57l’

dataviz sites from ENCODE mtg

June 21, 2016

https://d3js.org/
http://amp.pharm.mssm.edu/clustergrammer/

http://bibviz.com/
http://www.visualcinnamon.com/portfolio/top-2000-songs

GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding

June 21, 2016

http://bioinformatics.oxfordjournals.org/content/early/2015/11/05/bioinformatics.btv565

GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding

Haoyang Zeng
Tatsunori Hashimoto
Daniel D. Kang
David K. Gifford

Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP) : Nature Methods : Nature Publishing Group

June 18, 2016

http://www.nature.com/nmeth/journal/v13/n6/abs/nmeth.3810.html

Home – schema.org

April 23, 2016

https://schema.org/

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events : Nature Biotechnology : Nature Publishing Group

June 25, 2015

#Transcriptome analysis [focusing on brain tissue]
using…long-read[s]…reveals…co-association of
distant…exonshttp://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.3242.html

Mostly protein coding genes

Clan Genomics and the Complex Architecture of Human Disease: Cell

June 25, 2015

http://www.cell.com/cell/abstract/S0092-8674(11)01062-2?_returnURL=http%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867411010622%3Fshowall%3Dtrue

Genome evolution during progression to breast cancer

June 25, 2015

http://genome.cshlp.org/content/23/7/1097.long

Daniel E. Newburger1,6,
Dorna Kashef-Haghighi2,6,
Ziming Weng3,6,
Raheleh Salari2,
Robert T. Sweeney3,
Alayne L. Brunner3,
Shirley X. Zhu3,
Xiangqian Guo3,
Sushama Varma3,
Megan L. Troxell4,
Robert B. West3,7,
Serafim Batzoglou2,7 and
Arend Sidow3,5,7

Published in Advance April 8, 2013, doi:10.1101/gr.151670.112 Genome Res. 2013. 23:1097-1108

Amazon Web Services Announces Amazon Machine Learning

June 21, 2015

AWS Announces $AMZN #MachineLearning
http://www.marketwatch.com/story/amazon-web-services-announces-amazon-machine-learning-2015-04-09 Will it be useful for genomics? http://aws.amazon.com/machine-learning

Also, redshift

Retina MacBook Pro gets a processor bump across the line – TUAW

August 2, 2014

iPhone, iPad, Mac Buyer’s Guide: Know When to Buy
Good roundup for every model…
http://buyersguide.macrumors.com/#Retina_MacBook_Pro

Speed bump for Retina macbook pros…
http://m.tuaw.com/2014/07/29/retina-macbook-pro-gets-a-processor-bump-across-the-line

Retina MacBook Pro gets a processor bump across the line – TUAW

July 31, 2014

Speed bump for Retina macbook pros…
http://m.tuaw.com/2014/07/29/retina-macbook-pro-gets-a-processor-bump-across-the-line