Posts Tagged ‘x57l’

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Biological Data Science Meeting

September 10, 2016

Biological Data Science
October 26 – 29, 2016
Abstract Deadline: August 12, 2016

Organizers:

Bonnie Berger, Massachusetts Institute of Technology
Jeff Leek, Johns Hopkins University
Michael Schatz, Cold Spring Harbor Laboratory

https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=16

The meeting this year has an
“education forum”. A few speakers will be giving short
presentations on the curriculum and resources of various
institutions, followed by a panel Q&A discussion about best practices and needs in the field.

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GERV: a statis,tical method for generative evaluation of regulatory variants for transcription factor binding

July 23, 2016

GERV: stats method for generative evaluation of regulatory variants
for TF binding http://bioinformatics.oxfordjournals.org/content/early/2015/11/05/bioinformatics.btv565 Predicts effect of #allelic SNPs

GERV: a statistical method for generative evaluation of regulatory ariants for transcription factor binding

> Haoyang Zeng
> Tatsunori Hashimoto
> Daniel D. Kang
> David K. Gifford

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Biological Data Science Meeting

July 9, 2016

Biological Data Science
October 26 – 29, 2016
Abstract Deadline: August 12, 2016

Organizers:

Bonnie Berger, Massachusetts Institute of Technology
Jeff Leek, Johns Hopkins University
Michael Schatz, Cold Spring Harbor Laboratory

https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=16

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dataviz sites from ENCODE mtg

June 21, 2016

https://d3js.org/
http://amp.pharm.mssm.edu/clustergrammer/

http://bibviz.com/
http://www.visualcinnamon.com/portfolio/top-2000-songs

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GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding

June 21, 2016

http://bioinformatics.oxfordjournals.org/content/early/2015/11/05/bioinformatics.btv565

GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding

Haoyang Zeng
Tatsunori Hashimoto
Daniel D. Kang
David K. Gifford

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Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP) : Nature Methods : Nature Publishing Group

June 18, 2016

http://www.nature.com/nmeth/journal/v13/n6/abs/nmeth.3810.html

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Home – schema.org

April 23, 2016

https://schema.org/

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Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events : Nature Biotechnology : Nature Publishing Group

June 25, 2015

#Transcriptome analysis [focusing on brain tissue]
using…long-read[s]…reveals…co-association of
distant…exonshttp://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.3242.html

Mostly protein coding genes

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Clan Genomics and the Complex Architecture of Human Disease: Cell

June 25, 2015

http://www.cell.com/cell/abstract/S0092-8674(11)01062-2?_returnURL=http%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867411010622%3Fshowall%3Dtrue

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Genome evolution during progression to breast cancer

June 25, 2015

http://genome.cshlp.org/content/23/7/1097.long

Daniel E. Newburger1,6,
Dorna Kashef-Haghighi2,6,
Ziming Weng3,6,
Raheleh Salari2,
Robert T. Sweeney3,
Alayne L. Brunner3,
Shirley X. Zhu3,
Xiangqian Guo3,
Sushama Varma3,
Megan L. Troxell4,
Robert B. West3,7,
Serafim Batzoglou2,7 and
Arend Sidow3,5,7

Published in Advance April 8, 2013, doi:10.1101/gr.151670.112 Genome Res. 2013. 23:1097-1108

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