Archive for the 'SciLit' Category
Obesity-associated variants within FTO form long-range functional connections with IRX3
November 5, 2017Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element. – PubMed – NCBI
October 30, 2017Comparative…3D chromosomal architecture identifies a novel fetal Hb reg. element http://GenesDev.cshlp.org/content/31/16/1704.abstract #Pseudogene shifts v. promotor
Visualizing the molecular sociology at the HeLa cell nuclear periphery | Science
October 26, 2017http://science.sciencemag.org/content/351/6276/969.long
#Visualizing the molecular sociology [of complexes] at the HeLa cell nuclear periphery, w/ #CryoET at 10 Ang. res. http://science.ScienceMag.org/content/351/6276/969.long
Science. 2016 Feb 26;351(6276):969-72. doi: 10.1126/science.aad8857.
Visualizing the molecular sociology at the HeLa cell nuclear periphery.
Mahamid J1, Pfeffer S2, Schaffer M2, Villa E3, Danev R2, Cuellar LK2, Förster F2, Hyman AA4, Plitzko JM2, Baumeister W1.
GTEx paper
October 22, 2017Paper about what will be on eGTEx project:
https://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3969.html
Gtex Nature
https://www.nature.com/nature/journal/v550/n7675/full/nature24267.html https://www.nature.com/nature/journal/v550/n7675/full/nature24265.html https://www.nature.com/nature/journal/v550/n7675/full/nature24041.html http://www.nature.com/nature/journal/v550/n7675/full/nature24277.html
German activities on RNA privacy
October 21, 2017http://www.mhumbert.com/publications/oakland17.pdf
Identifying Personal DNA Methylation Profiles by Genotype Inference
Michael Backes⇤, Pascal Berrang⇤, Matthias Bieg†, Roland Eils†‡, Carl Herrmann†‡, Mathias Humbert⇤, Irina Lehmann§
Re-Identification of Individuals in Genomic Data-Sharing Beacons via Allele Inference | bioRxiv
October 21, 2017https://www.biorxiv.org/content/early/2017/10/09/200147
higher order markov to predict snps
Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies
October 21, 2017Geeleher cites http://genome.CSHLP.org/content/early/2017/08/28/gr.221077.117?top=1 … Novel pharmacogenomic biomarkers by imputing drug response in cancer..from…genomics studies #ASHG17
http://genome.cshlp.org/content/early/2017/08/28/gr.221077.117?top=1
SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models | Genome Biology | Full Text
October 21, 2017Multistep nucleation of nanocrystals in aqueous solution : Nature Chemistry : Nature Research
October 1, 2017Multistep nucleation of nanocrystals in…solution
http://www.Nature.com/nchem/journal/v9/n1/full/nchem.2618.html Creation of Au-Au pair, expelling water, drives cluster formation
QT:{{”
To explain how the gold-rich aqueous phase forms and breaks down in Figures 1A and 2A, we
performed ab-initio calculations of a hydrated gold atom pair (Figure 4). This hydrated atom pair
becomes ionized when brought closer together: the left gold atom plus two nearby water molecules
form a linear cationic coordination complex, [Au(H2O)2]+1, while the right gold atom becomes an
anion surrounded by a simple hydration shell. Other (square planar and linear) complexes involving
chloride and hydroxide ligands may also participate, depending on pH (26, 33) (Section SI2). For
nanoclusters to form inside the gold-rich aqueous phase, pairs of gold atoms within it must be partially
dehydrated. In our calculations (Figure 4), this dehydration is delayed by a 7.6 kcal/mol (12.9 kBT)
energy barrier required to breakdown the linear cationic complex (close to the gold anion).
“}}
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