Archive for the 'SciLit' Category

To share is to be a scientist | Nature Methods

July 25, 2023

https://www.nature.com/articles/s41592-023-01927-7

GPT-4 Technical Report

June 25, 2023

Just stumbled on this. Amazing how well GPT-4 seems to do on AP tests. One notable exception is AP English. I wonder why?
https://twitter.com/mattgroh/status/1635755153830584321
https://cdn.openai.com/papers/gpt-4.pdf
Test results that gpt4 can get; Doesn’t do well in ap English

Nat Biotechnol 2023 – How will generative AI disrupt data science in drug discovery?

June 18, 2023

https://www.nature.com/articles/s41587-023-01789-6

Lattice protein folding with QAnnealing

April 13, 2023

https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.4.043013

Fast and accurate Bayesian polygenic risk modeling with variational inference: The American Journal of Human Genetics

April 13, 2023

https://www.cell.com/ajhg/fulltext/S0002-9297(23)00093-9

Quantitative GWAS & QTL studies

February 25, 2023

Primer
Published: 25 January 2023

Molecular quantitative trait loci

François Aguet, Kaur Alasoo, Yang I. Li, Alexis Battle, Hae Kyung Im, Stephen B. Montgomery & Tuuli Lappalainen

Nature Reviews Methods Primers volume 3, Article number: 4 (2023)

Related to the discussion about quantitative GWAS and QTL, this primer review (and in particular box 1) is helpful in clarifying the (non) difference between the two types of studies:

https://www.nature.com/articles/s43586-022-00188-6

The statistics behind quantitative GWAS and QTL studies is the same, the only main difference might be the multiple testing correction procedure.
In general, it’s more a nomenclature distinction, as the term “QTL” is often used specifically for molecular traits.

BioGPT: generative pre-trained transformer for biomedical text generation and mining | Briefings in Bioinformatics | Oxford Academic

February 22, 2023

https://academic.oup.com/bib/article-abstract/23/6/bbac409/6713511?login=false

https://github.com/microsoft/BioGPT

Gencode De novo birth of functional microproteins in the human lineage: Cell Reports

December 21, 2022

https://www.cell.com/cell-reports/fulltext/S2211-1247(22)01696-5

APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes | Nature

December 9, 2022

https://www.nature.com/articles/s41586-022-05439-w

Genetics goes to Hollywood | Nature Genetics

November 25, 2022

https://www.nature.com/articles/ng1197-260

https://www.nature.com/articles/ng1197-260.pdf?proof=t2019-8-23