Posts Tagged ‘from’

Ten recommendations for creating usable bioinformatics command line software

January 19, 2014

http://www.gigasciencejournal.com/content/2/1/15

Average Retail Price of Electricity to Ultimate Customers by End-Use Sector

January 18, 2014

$0.19/kW*hr in CT in ’13

http://www.eia.gov/electricity/monthly/epm_table_grapher.cfm?t=epmt_5_6_a

evolutionary theory of cancer

January 18, 2014

http://michorlab.dfci.harvard.edu/publications/Evolutionary%20Theory%20of%20Cancer,%20NYAS2009.pdf

Guide to cancer genomics

January 17, 2014

http://www.cancer.gov/cancertopics/understandingcancer/cancergenomics/AllPages

Garden Court Café | New York | Asia Society

January 6, 2014

http://asiasociety.org/new-york/visit/garden-court-caf%C3%A9

OLD: [[* 12p-3p (twtfss ~m), 12-2 summer , 212-570-5202 *]] x312

11-5p twtfss except summer

HuRef sperm sequencing

January 4, 2014

http://genome.cshlp.org/content/early/2013/01/02/gr.144600.112.abstract

huref on Solid

January 4, 2014

QT:{{”
To demonstrate the promise of personalized genome analysis, the genome of HuRef was sequenced using the Life SOLiD™ platform. Nimbus Informatics performed the analytical work for this project and has made the resulting data available here, running entirely on the Amazon Cloud.
“}}
http://huref.nimbusinformatics.com

single cell trascriptomes and WGCNA

January 2, 2014

Nature. 2013 Aug 29;500(7464):593-7. doi: 10.1038/nature12364. Epub 2013 Jul 28.

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.

Xue Z, Huang K, Cai C, Cai L, Jiang CY, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu JY, Horvath S, Fan G.

QT:{{”
…We report here a comprehensive analysis of transcriptome dynamics from oocyte to morula in both human and mouse embryos, using single-cell RNA sequencing…. By weighted gene co-expression network analysis, we find that each developmental stage can be delineated concisely by a small number of functional modules of co-expressed genes. This result indicates a sequential order of transcriptional changes in pathways of cell cycle, gene regulation, translation and metabolism, acting in a step-wise fashion from cleavage to morula. Cross-species comparisons with mouse pre-implantation embryos reveal that the majority of human stage-specific modules (7 out of 9) are notably preserved, but developmental specificity and timing differ between human and mouse. Furthermore, we identify conserved key members (or hub genes) of the human and mouse networks.
“}}

Kruglyak paper on C. elegans

January 2, 2014

A paper on C. elegans that’s very informative:
http://www.nature.com/ng/journal/v44/n3/full/ng.1050.html
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

Most notable of their findings is evidence of recent selective sweeps on chromosomes I, IV, V and (sort of) X. These sweeps have the potential to fix pseudogenes that might have been present at the time.

GenomeWeb young investigator feature

January 2, 2014

Young Investigator for Ekta Khurana

http://www.genomeweb.com/genomeweb-feature-eighth-annual-young-investigators