DUX4 binding to #retroelements creates promoters that are active… Highlights #chipseq binding sites in #repeats
http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003947 http://www.ncbi.nlm.nih.gov/pubmed/?term=24278031
PLoS Genet. 2013 Nov;9(11):e1003947. doi:
10.1371/journal.pgen.1003947. Epub 2013 Nov 21.
DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis.
Young JM, Whiddon JL, Yao Z, Kasinathan B, Snider L, Geng LN, Balog J, Tawil R, van der Maarel SM, Tapscott SJ.
Posts Tagged ‘from’
retroelement functional recruitment
May 12, 2014cell free DNA circulating for cancer
May 12, 2014NYT recently ran an article as well:
http://www.nytimes.com/2014/04/08/business/cancer-analysis-tools-circumvent-biopsies.html
http://www.nature.com/nm/journal/v20/n4/abs/nm.3511.html
An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage
http://www.nature.com/nm/journal/vaop/ncurrent/abs/nm.3519.html
http://stm.sciencemag.org/content/6/224/224ra24
http://www.nejm.org/doi/full/10.1056/NEJMoa1213261
http://stm.sciencemag.org/content/4/162/162ra154.full
DIAGNOSTICS: Detection of Chromosomal Alterations in the Circulation of Cancer Patients with Whole-Genome Sequencing
And now a video game for cancer genomics !
May 11, 2014we can play in meetings, and tell people we are working on cancer research.
http://scienceblog.cancerresearchuk.org/2014/02/04/download-our-revolutionary-mobile-game-to-help-speed-up-cancer-research
Nature Genetics calls for data analysis papers
May 9, 2014Call for… analysis papers: nice description of hypothesis generation v. validation & 3 types of #network robustness
http://www.nature.com/ng/journal/v46/n3/full/ng.2914.html
Call for data analysis papers
Nature Genetics 46, 213 (2014) doi:10.1038/ng.2914Published online 26 February 2014
Deadline expired but maybe still relevant…
BigData MSc
May 9, 2014Another VAT!
May 9, 2014Variant Association Tools for Quality Control and Analysis of Large-Scale Sequence and Genotyping Array Data
http://www.cell.com/ajhg/abstract/S0002-9297(14)00176-1
vs
Yale-UCL collaborative
May 2, 2014This is the link to the student exchange program:
http://www.yale-ucl.org/ahs/yale_exchange_info.aspx
The student exchange is part of a wider collaboration scheme between Yale and UCL.
